Bordetella sp. H567: AKI39_06670
Help
Entry
AKI39_06670 CDS
T04979
Symbol
ligD
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
boh
Bordetella sp. H567
Pathway
boh03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
boh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
AKI39_06670 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
boh03400
]
AKI39_06670 (ligD)
Enzymes [BR:
boh01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
AKI39_06670 (ligD)
DNA repair and recombination proteins [BR:
boh03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
AKI39_06670 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
AOB30445
UniProt:
A0A1B2R0Y2
LinkDB
All DBs
Position
complement(1475263..1477884)
Genome browser
AA seq
873 aa
AA seq
DB search
MADTLAKYRQKRNFDVTSEPAGGGKANAAARAFVIQKHWATRLHYDFRLELDGAMKSWAV
PKGPSYDPAIKRMAVQVEDHPIAYNQFEGEIPKGQYGAGKVIIWDEGTWQPVGDPRKGYR
DGHLKFDLMGAKMQGRWALVRLHGKENERQPPWLLIKDRDEFARPEQEFSVVDEMPDSVV
PLRAQRKKALARAADTGTAGKAPKTGKTAKTGKTEKAGKTEEDGPAHKLPGVARAVPATL
KPQLATLVDGVPPNVADWIYEVKFDGYRILARLDEDGPRLYTRNGHDWSRKMPHLVQVLG
KLKVPGTWIDGEIVVLADNGAPSFQALQNAFEGERTGDIVFYAFDLPFVAGRDLREEPLT
TRRALLEQLLGAAPDGPVRFSAAFDAAPQELVQSACKMGLEGIIAKRRNAGYVSRRSDSW
LKIKCARRQEFVIVGYTDPAGSRTGLGALLVAVHDEKGGLRYAGKVGTGFDTRGLNEMAK
KLQAIEIEERPLPHQADMPRRAHWVKPELVAEVSFGEWTQSGHIRHSVFRGLRTDKPARA
ITREAPVPAEAVAAAAGSDAETPPLQAPSRQAKAKKAATVKEKPGRLSNPDRVIDPSTGL
TKLDLARYYGLVAPLLLDHLKGRPVSLVRAPGGIQEPLFFQKHLEAAMPGVKALPQRLDP
GHPSLLEVPSDVAIMSAAQMNVVEFHTWNAVKSAIDKPDRMLFDLDPGDGVKWPAMQQAA
GLVRVLLRELGMQCWLKTSGGKGLHVVVPLRKQYGWDAIKGFSEAIVRHLARTLPQMFVA
KSGPKNRVGKIYPDYLRNGFGATTVAAWSARARPGLGISVPIAWDELPELNSSAQWTISN
AHTRLDAGNAPWADYRPQSVAAAMKTLGYEPKG
NT seq
2622 nt
NT seq
+upstream
nt +downstream
nt
atggccgacacgcttgcgaagtaccggcagaagcgcaatttcgacgtcacgtcggaaccg
gccggtggcggcaaggccaatgccgcggcgcgcgccttcgtgatccagaagcactgggcc
acgcggctgcactacgatttcaggctggagctggatggcgccatgaaaagctgggcggtg
cccaagggccccagctacgaccccgccatcaagcgcatggcggtccaggtggaagaccat
cccatcgcctacaaccagttcgaaggcgagattccgaaaggccagtacggcgcgggcaag
gtcatcatctgggatgaaggtacctggcagccggtgggcgatccgcgcaaggggtatcgg
gatggccacctgaaattcgacctcatgggcgcgaagatgcagggccgctgggcgctggta
cggctgcatggcaaggaaaacgagcgtcagccgccgtggctcctgatcaaggaccgcgat
gaattcgcccgcccggaacaggaattcagcgtggtcgacgaaatgcccgacagcgtggtg
ccgctgcgtgcgcagcgcaagaaggcgctggcccgtgccgcggacacgggcacggccggg
aaggcgccgaagaccgggaagaccgcgaagaccgggaagaccgagaaggccgggaagacc
gaagaggatggtccggcgcacaaactgccgggcgtggcgcgtgcagtacccgccaccttg
aagccgcagctcgccacgctggtcgatggcgtgccgcccaatgtggccgactggatctac
gaggtgaagttcgacggctaccgcatcctggcccgcctggacgaggacgggccgcgcctc
tacacgcgcaatggccacgactggagccgcaagatgccgcacctggtccaggtgctgggc
aagctgaaggtgccgggaacctggatcgacggcgagatcgtcgtcctggccgacaacggc
gcgcccagcttccaggcgctgcagaatgccttcgaaggcgagcggacgggcgacatcgtt
ttctatgccttcgaccttcctttcgtggcgggccgagacctgcgcgaggaaccgctgacg
acgcgtcgcgcgctgctggagcagttgctcggcgccgcgccggacggccccgtgcgtttc
agcgcggccttcgacgcggccccgcaggagctggtgcaatccgcctgcaagatggggctg
gaagggatcatcgccaaacgccggaacgccggctacgtgtcgcggcgctcggatagctgg
ctcaagatcaaatgcgcacggcgacaggagttcgtcatcgtcggatataccgatcctgcc
ggcagccgcacgggcctgggtgcgctgctggtggcggtgcatgatgaaaaaggcggcttg
cgctatgccggcaaggtgggtaccggtttcgatacgcgcgggctgaacgagatggcgaag
aagctgcaggccatcgagatcgaggaacggcccctgccccaccaggccgatatgccgcgc
cgcgcgcattgggtcaagcccgagctggtggccgaagtctcgttcggtgaatggacacag
tcgggccacatacggcattccgtgttccgcggcctgcgcacggacaagccggcgcgcgcc
attacccgcgaagcgccggtacccgccgaggccgtcgccgccgccgcgggcagcgatgcg
gaaacgccacccctccaggccccctcgcggcaagccaaggcgaagaaggctgccacggtg
aaagaaaagccaggccgcctctccaatccggatcgcgtcatcgatccgtccaccggactc
accaagctcgatctcgcccgctactacggcctggtcgcgccgctgctgctggaccacctg
aaaggcaggcccgtatcgctggtgcgcgcgccgggcggcatacaggaacccttgttcttc
cagaagcacctggaagccgccatgccgggcgtcaaggcgctgccgcagcggctggacccg
ggccacccgtcgctgctggaagtgccttccgacgtggccatcatgtcggccgcgcagatg
aatgtggtcgaattccatacctggaatgccgtcaagagcgcgatcgacaagcccgatcgc
atgctcttcgatctggatcccggcgacggcgtgaaatggccggccatgcagcaggcggcc
ggactggtgcgcgtgctgttgcgggagctgggcatgcagtgctggctgaagaccagcggc
ggcaagggcctgcatgtggtggtcccgctgcgcaagcaatacggctgggacgccatcaag
gggttttccgaggccatcgtccgccacctggcccggacactgccccagatgttcgtggcg
aaaagcggccccaagaatcgggtgggcaaaatctacccggactacctgcgcaacggcttt
ggcgcgacgacggtggccgcgtggtcggcgcgcgcccgccccggcctgggtatctcggtg
cccatcgcctgggacgagctgccggaactcaacagcagcgcgcagtggacgatcagcaac
gcccacacccgcctggatgccggcaacgccccctgggcggactaccggccgcagtccgtg
gccgccgcgatgaagacgctgggctacgagccgaaaggctga
DBGET
integrated database retrieval system