Bordetella sp. H567: AKI39_17900
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Entry
AKI39_17900 CDS
T04979
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
boh
Bordetella sp. H567
Pathway
boh03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
boh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
AKI39_17900
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
boh03400
]
AKI39_17900
Enzymes [BR:
boh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
AKI39_17900
DNA repair and recombination proteins [BR:
boh03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
AKI39_17900
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
MFD_D3
ResIII
Glyco_tran_WecG
UB2H
Motif
Other DBs
NCBI-ProteinID:
AOB32185
UniProt:
A0A1B2R5U2
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All DBs
Position
3989618..3993082
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AA seq
1154 aa
AA seq
DB search
MPADFPPSPAPPLVPSTDSILAALKPGTRYAQPRPPGSGDAWLLADLARHAARPLLVLTA
DPLEAQRLTDEIHLFAPDLRVRQLPDWETLPYDAFSPHHDLISERLKTLDALMHHTVDVL
TVPVTTALYRLAPPAFMAAYTFSFKQRDKLDEAALRAQLTLANYTHVTQVTAPGEFCLRG
GLIDLFPMGSAVPYRLDLFDDEIESIRAFDVDTQRSLYPVNQVQLLPGREFPMDEEARNR
FRARFRELFEGDPSRALPYRDIGNGIAFAGVEYYLPLFFDQTATLFDYLAPSTITVTIGD
IDDAIRRFAQDTSSRYGFLKSDRERPVLPPSALFLDTQALFEQLKDFERLALTAEPQHPD
IGPAPDVAVMRRADDPVARLRAVVDAGKWRILLCADSAGRRETLAQMLAEFDLAPDFEAA
SIEDFRLSPARLALLAAPLTSGFSLPAEGIAFITENDLYPGQAAVGRRGRREQERASNVE
AMVRDLSELREGDPVVHAQHGIGRYHGLINMDMGEGEMEFLHLEYANGSTLYVPVSQLHV
IARYSGADPEAAPLHQLGSGQWDKARRKAAKQVRDTAAELLDLYAKRAAREGYAFKLQLN
DYEAFAEGFGFEETADQAAAIQAVILDMTSGKPMDRLVCGDVGFGKTEVALRAAFLAVAN
GKQVALLCPTTLLAEQHAQTFADRFADWPVRVVELSRFRSAKEVAAAIQGINNGSVDIVI
GTHKILSKDVRFKQLGLVIIDEEHRFGVRQKEALKSLRAEVDVLTLTATPIPRTLGMSLE
GIRDFSVIATAPQKRLAIKTFVRREDGSTVREALLRELKRGGQAYFLHNEVETIHNRRAR
LEELVPEARIAVAHGQMGERDLEQVMKGFYQQRFNVLLCTTIIETGIDVPTANTIVIHRA
DRFGLAQLHQLRGRVGRSHHQAYAYLLTPGEDAITSNAKKRLEAIQAMEELGSGFYLAMH
DLEIRGTGEVLGESQSGNIQEVGFSMYTDMLNEAVRALKAGEEPDLEAPFGKACEVNLHA
PALLPADYCADVHARLAVYKRLSHAAGEDDLIRIQEELIDRFGKLPESAQTLLASHRLRL
AAQALGIIKIDASETQALVQFGPNPPVDSLRIIELVQKQRHIKLAGQDKLRVEIKGQQIP
ARVDAVRTVLRALA
NT seq
3465 nt
NT seq
+upstream
nt +downstream
nt
atgcctgcagatttccccccctctcccgcgccgccgctggtcccgtcgacggactccatc
ctggcggccctgaagcccggcacccgatatgcacagccccgccccccagggtcgggcgat
gcctggctgcttgccgacctcgctcgccacgccgcgcgcccacttctggtgctgaccgcc
gatccgctggaagcccagcggctgaccgacgaaatccacctgttcgcgcccgacctgcgc
gtgcgccagctgcccgactgggaaacgctgccctacgatgcgttctcgcctcaccacgac
ctgatttccgagcggctgaagacgctggacgcgctgatgcaccatacggtcgacgtgctg
accgtgccggtgaccaccgcgctgtatcgcctggcgccgccagcgttcatggcggcctat
accttttcgttcaagcagcgcgacaagctggacgaagcggccttgcgcgcgcagctgacg
ctggccaactacacgcacgtcacccaggtcacggcgcccggggaattctgcctgcgcggc
gggctgatcgacctgttccccatgggttcggccgtgccctatcgcctggacctgttcgac
gacgaaatcgaatcgatacgcgccttcgacgtcgacacccagcgcagcctctatccggtc
aatcaggtccagctgctgcctggccgcgaattcccgatggacgaggaagcgcgcaaccgc
ttccgcgcgcggtttcgcgagcttttcgaaggcgatccctcgcgcgccttgccttatcgc
gacatcggcaacggcattgccttcgcgggggtcgaatactacctgccgctgttcttcgac
cagaccgccacgctgttcgactacctggcgccgtcgaccatcaccgtcacgatcggcgac
atcgacgacgccatccgccgcttcgcccaggacacctccagccgctacggattcctgaag
agcgaccgcgaacgcccggtgctgccgccctccgcgctgttcctggatacgcaggcgctg
ttcgaacaattgaaggatttcgaacgcctggcgctgaccgcggaaccccagcatccggac
atcgggccggcgcccgacgtggccgtcatgcggcgggccgacgatcccgtggcgcggctg
cgtgccgtcgtcgatgccggcaagtggcgcatcctgctgtgcgcggattccgccggacgg
cgcgagaccctggcccagatgctggccgaattcgacctggcgccggacttcgaagccgcc
tcgatcgaggatttccggctgtcgccggcgcgcctggccctgctggccgccccgctgacc
tcgggtttcagccttcccgccgaaggcatcgccttcattaccgaaaacgacctgtatccg
ggccaggccgcggtaggccggcgcggccgccgcgaacaggaacgcgccagcaacgtcgaa
gccatggtgcgcgacctgtcggaactgcgcgaaggcgacccggtggtccacgcgcagcac
ggcatcggtcgctaccatggcctgatcaatatggacatgggcgaaggcgagatggaattc
ctgcatctcgaatacgccaatggcagcacgctttatgttccggtctcgcagctgcacgtc
atcgcgcgctacagcggcgccgatccggaagccgcgccgctgcaccagctgggttccggg
cagtgggacaaggcgcggcgcaaggccgccaagcaggtgcgcgataccgcggcggaactg
ctggacctgtacgccaagcgggccgcgcgcgaaggctacgccttcaagctgcaactgaac
gactacgaagccttcgccgaaggcttcggcttcgaggaaacggccgaccaggccgccgcc
atccaggccgtgatcctggacatgacctccggcaagcccatggaccggctggtctgcggc
gacgtcggcttcggcaagacggaagtcgccctgcgggccgcctttctggcggttgccaat
ggcaagcaggtggcgctgctctgtcccaccaccctgctggcggaacagcacgcgcagacc
ttcgctgaccgcttcgccgactggcccgtgcgcgtcgtggagctgtcgcgcttccgttcc
gccaaggaagtcgccgcggccatccagggcatcaacaacggcagcgtcgatatcgtcatc
ggcacgcacaagatcctatccaaggatgtccgattcaagcagctcggcctggtgatcatc
gacgaggaacaccgcttcggcgtgcgccagaaagaggccttgaaatccctgcgcgccgaa
gtggacgtgctcacgctgaccgctacgccgattccgcgcacgctgggcatgtcgctggaa
ggcatacgcgatttttccgtcatcgccaccgcgccgcaaaagcgcctggccatcaagacc
ttcgtgcggcgcgaagacggcagcaccgtccgcgaagccttgctgcgcgagctcaagcgc
ggcggccaggcctacttcctgcacaacgaagtcgaaaccatccacaaccggcgcgcccgc
ctggaagaactggtgcctgaagcgcgcatcgccgtggcccatggccagatgggggagcgc
gatcttgaacaggtcatgaaggggttctaccagcagcgtttcaacgtgctgctctgtacc
accatcatcgagaccggcatcgacgtcccgacggccaataccatcgtgatccatcgcgcg
gaccgcttcggcctggcgcagctgcaccagctgcgcggccgcgtcggccggtcccaccac
caggcctatgcctacctgctcactccgggcgaagacgcgatcacgtccaatgccaagaag
cgcctggaggcgatccaggccatggaagaactgggctcgggcttctacctggccatgcac
gatctggaaatccgcggcaccggcgaagtgctgggcgaatcgcagtccggcaatatccag
gaagtcggcttctccatgtacaccgatatgctgaacgaagccgtgcgcgccctgaaagcg
ggagaagaacccgacctggaagcgcccttcggcaaggcctgcgaagtcaatctgcatgcg
ccggccctgctgccggccgactattgcgccgacgtgcatgcccgcctggccgtgtacaag
cgcctgtcgcacgcggccggcgaagacgacctgatccgcatccaggaagaactgatagac
cgcttcggcaagctgccggaatcggcacagacgctgctggcctcgcaccgcctgcgactg
gcggcgcaagccctgggcatcatcaagatcgatgccagcgaaacccaggcgctggtgcag
ttcggccccaacccgccagtggactcgctgcgcatcatcgaactcgtgcagaaacagcgc
catatcaagctggccggccaggacaagctgcgcgtggaaatcaaggggcagcagatcccc
gcccgcgtcgacgcggtgcgcacggtgctgcgcgccctggcatga
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