Burkholderia oklahomensis E0147: DM82_1058
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Entry
DM82_1058 CDS
T03284
Symbol
hfq
Name
(GenBank) RNA chaperone Hfq
KO
K03666
host factor-I protein
Organism
bok
Burkholderia oklahomensis E0147
Pathway
bok02024
Quorum sensing
bok03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bok00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
DM82_1058 (hfq)
09140 Cellular Processes
09145 Cellular community - prokaryotes
02024 Quorum sensing
DM82_1058 (hfq)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bok03019
]
DM82_1058 (hfq)
03036 Chromosome and associated proteins [BR:
bok03036
]
DM82_1058 (hfq)
Messenger RNA biogenesis [BR:
bok03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Chaperones
DM82_1058 (hfq)
Chromosome and associated proteins [BR:
bok03036
]
Prokaryotic type
Nucleoid associated proteins
Other nucleoid associated proteins
DM82_1058 (hfq)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Hfq
LSM
Motif
Other DBs
NCBI-ProteinID:
AIO65441
LinkDB
All DBs
Position
1:complement(1220806..1221393)
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AA seq
195 aa
AA seq
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MANPAESHPQNDFINAARKERKRVEIYLVNGIRLTGCIESFDQYLVMLRTPVGLQGIYKR
AISTIQLDTGGSRPGGPRGPRPGGPHGGGGRSGGREGGGHGPYGSHGGSREPRGDGGGYG
SRESRGGDGYGSRESRGDGYGAREPREPREPRESYGAPREPQDGVSTPSGTQERNGNGPV
IVTRRRRSLGPTDGQ
NT seq
588 nt
NT seq
+upstream
nt +downstream
nt
atggccaatcctgcagaatcccatccgcaaaacgacttcatcaatgccgcgcgcaaggaa
cgcaagcgcgtcgaaatctatctcgtcaacggtattcgcctgacggggtgcattgagtcg
ttcgaccagtacctggtgatgctgcgcacgcccgtcggcctgcaaggcatctataaacgc
gccatctcgacaatccagctcgacacgggcggctcccgtccgggcggcccgcgcggtccg
cgtccgggcggcccgcacggcggcggcggccgctccggcgggcgcgaaggcggcggccac
ggtccgtacggctcgcacggcggctcgcgggagccgcgcggcgacggcggcggctatggc
tctcgcgaatcccgcggcggcgacggctatggctcccgcgaatcccgcggcgatggctac
ggcgcgcgcgagccgcgtgaaccgcgcgagccccgtgaatcgtacggcgcgccgcgcgag
ccgcaagacggtgtgtcgacgccgtccggcacgcaggagcgcaacggcaacggccccgtg
atcgtcacgcgccgccgccgctcgctcggtccgaccgacggccaataa
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