KEGG   Burkholderia oklahomensis E0147: DM82_1058
Entry
DM82_1058         CDS       T03284                                 
Symbol
hfq
Name
(GenBank) RNA chaperone Hfq
  KO
K03666  host factor-I protein
Organism
bok  Burkholderia oklahomensis E0147
Pathway
bok02024  Quorum sensing
bok03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:bok00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    DM82_1058 (hfq)
 09140 Cellular Processes
  09145 Cellular community - prokaryotes
   02024 Quorum sensing
    DM82_1058 (hfq)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:bok03019]
    DM82_1058 (hfq)
   03036 Chromosome and associated proteins [BR:bok03036]
    DM82_1058 (hfq)
Messenger RNA biogenesis [BR:bok03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   Other RNA degradation factors
    Chaperones
     DM82_1058 (hfq)
Chromosome and associated proteins [BR:bok03036]
 Prokaryotic type
  Nucleoid associated proteins
   Other nucleoid associated proteins
    DM82_1058 (hfq)
SSDB
Motif
Pfam: Hfq LSM
Other DBs
NCBI-ProteinID: AIO65441
LinkDB
Position
1:complement(1220806..1221393)
AA seq 195 aa
MANPAESHPQNDFINAARKERKRVEIYLVNGIRLTGCIESFDQYLVMLRTPVGLQGIYKR
AISTIQLDTGGSRPGGPRGPRPGGPHGGGGRSGGREGGGHGPYGSHGGSREPRGDGGGYG
SRESRGGDGYGSRESRGDGYGAREPREPREPRESYGAPREPQDGVSTPSGTQERNGNGPV
IVTRRRRSLGPTDGQ
NT seq 588 nt   +upstreamnt  +downstreamnt
atggccaatcctgcagaatcccatccgcaaaacgacttcatcaatgccgcgcgcaaggaa
cgcaagcgcgtcgaaatctatctcgtcaacggtattcgcctgacggggtgcattgagtcg
ttcgaccagtacctggtgatgctgcgcacgcccgtcggcctgcaaggcatctataaacgc
gccatctcgacaatccagctcgacacgggcggctcccgtccgggcggcccgcgcggtccg
cgtccgggcggcccgcacggcggcggcggccgctccggcgggcgcgaaggcggcggccac
ggtccgtacggctcgcacggcggctcgcgggagccgcgcggcgacggcggcggctatggc
tctcgcgaatcccgcggcggcgacggctatggctcccgcgaatcccgcggcgatggctac
ggcgcgcgcgagccgcgtgaaccgcgcgagccccgtgaatcgtacggcgcgccgcgcgag
ccgcaagacggtgtgtcgacgccgtccggcacgcaggagcgcaacggcaacggccccgtg
atcgtcacgcgccgccgccgctcgctcggtccgaccgacggccaataa

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