Aristophania vespae: GT348_03445
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Entry
GT348_03445 CDS
T06386
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
bomb
Aristophania vespae
Pathway
bomb03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
bomb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
GT348_03445 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bomb03400
]
GT348_03445 (mfd)
Enzymes [BR:
bomb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
GT348_03445 (mfd)
DNA repair and recombination proteins [BR:
bomb03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
GT348_03445 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
UvrB_inter
DEAD
Helicase_C
CarD_TRCF_RID
ResIII
MFD_D3
AAA_16
UB2H
SecA_DEAD
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
QHI95446
UniProt:
A0A6P1NAL6
LinkDB
All DBs
Position
770800..774285
Genome browser
AA seq
1161 aa
AA seq
DB search
MAHENDHISSFGPTIWGVPDGSIAFLLRHRLSEHSGPVLHIARNDSELAELGDMLAWLMP
EVEILRFPAWDCLPYDRISPNPTITAERAATLSHLLQPAPKCGRIVLTTVNSLIQRVPPR
KSFEGQVLSVKSGDQLEATHLINVLIGRGYSRVDTVMDRGEFATRGGIFDLFPADAQDPI
RLDFFGDEVENIRSFDVATQRSTNEIKSFSLGPVSEYSLDPASISRFKNGWRDSFGVNAL
QDVLYQQITEARRAAGAEHYLPLFHEGDGSSMETLLDYLPNVAISFERDAAEMFKARLEM
IADHYQARLSAVHEGELPYRPLAPHRLYLDQHGWDSMLADKFKVQLSPFAKPDGMEGVDL
KYRPGPVFSSLGGTAKEKIFDVFGEQVKNWAKEGKRTYITAWSRGSRERIAHILKEHGIE
TQLYDDWHQAAGMDKNYIGMLVLSLERGFVTDRQAFVSEQDLLGERLAKPPRRKRKTGDF
ITQIGEIAENDLVVHEEYGIGRYVGLETVKEDRVAHDYLSILYDGEQRLLLPVENIDLLS
RYGSEQDGVQLDRLGGASWQARKAKMKTRLREMASELIRTAASRAMKEAPSMLPAEGLWD
EFCARFPYIETDDQSRAIADVLEDMGSGRPMDRLVCGDVGFGKTEVALRAAFVAALSGMQ
VAVVVPTTLLARQHYMSFTKRFEGLPVNIAQLSRLLTAKQASKVREGLSDGTIDIVIGTH
ALLAKTISFNRLGLLVIDEEQHFGVSHKEKLKTLCEDVHVLTLSATPLPRTLQLSLSGVR
EMSLIATPPTDRLSVRTFITPFDRVMIQEAIQRERFRGGQIFCVVPRLSDMGPLSERLKE
IVPDATIAEAHGRLSPTELEKVMTEFSEGKFDILLSTNIVESGLDMPGVNTIIIHRADRF
GLGQLYQLRGRVGRGKQRGYSYLTWPQTHPLSAASIKRLEIMQTLDSLGAGFVLASHDLD
MRGAGNLLGEEQSGHIKEVGIELYQQMLQEAVIDLRKERGKAVTEDEKWTPIISLGLPVL
LPETYVTDLSVRLSLYRRIANLKDESELDAMRVELVDRFGPLPTEVENLLEIVILKKLCL
EAGVERLEAGPKGMVLQFRNNRFANPEGLLKWIDRNQKAGVKIRSDHKLAMIREMKNAVR
LSMARKILTSLCKLVEKANEA
NT seq
3486 nt
NT seq
+upstream
nt +downstream
nt
atggcgcatgaaaacgatcatatctcttcatttggtccaactatatggggggtacctgat
gggagtatcgcttttctcttacgacatcgtctttctgaacattctggcccagttttacat
attgcccgtaatgattctgaactagcagaattaggcgatatgcttgcttggcttatgcct
gaggttgaaattttacgttttcctgcgtgggattgtttgccttatgatagaatatcgcca
aatccgactattacagccgagcgcgctgcgaccttaagtcacttattacagcctgcgccc
aaatgtggcaggatcgttcttacaacggttaattcattaattcagcgtgtaccgccacgc
aagagttttgaaggacaggttttatctgtaaaatctggtgatcagttagaggctactcat
cttattaatgtgcttataggaagaggttacagccgcgtcgatacagtgatggatcgtgga
gaatttgcgacaaggggagggatttttgatttatttcctgctgatgcgcaagatcctatt
cgcttggatttttttggtgatgaagtagagaatatacggtcttttgacgttgctacccaa
cggtctaccaatgagataaaatcatttagtctagggcctgtttctgaatattcgctcgat
cctgccagtataagccggtttaaaaatggttggcgcgattcttttggcgttaacgcgcta
caagatgtgctttatcaacaaattaccgaagccagacgtgcggccggtgcagagcattat
cttcctctctttcatgaaggggatggtagttcaatggaaacccttcttgattatttgcct
aatgtagcaatcagttttgagcgtgatgcggctgaaatgtttaaagcacgtcttgaaatg
atagccgatcactatcaggcgcgccttagtgccgttcatgagggagagcttccttatagg
ccgctggcacctcatagattatatctggaccaacatggctgggacagcatgttagcagat
aaatttaaggtgcagctaagtccctttgccaagccagatggaatggaaggtgttgatctt
aaataccgccctggcccagtattttccagtttgggaggtactgcaaaagaaaagattttt
gatgtttttggtgaacaggtcaaaaattgggccaaagaaggtaaacgcacatatataaca
gcctggagccgggggtcacgcgaaagaatagcgcatatccttaaagaacatggcattgaa
acccagctttatgatgactggcatcaggcagctggtatggataaaaactatattggcatg
ttggtgttgtcacttgagcgtggcttcgttaccgaccgccaagcttttgtttctgaacag
gatttgcttggtgaacgtttagcaaaacctccaagacgcaaacgcaagacgggtgatttc
attacccaaattggtgaaattgctgaaaatgatctcgtagtgcatgaagaatatggcata
ggtcgttatgtcggcttagagaccgttaaagaagatcgtgttgctcatgattatctctca
atcctttatgatggtgagcaaaggcttttacttcctgtagaaaatattgatcttcttagc
cgttacggttctgagcaagatggtgttcagctcgatcgtttagggggagcttcatggcaa
gcgcgtaaagccaaaatgaaaacacgtttgcgtgaaatggcaagcgaattaatacgcact
gctgcatcacgtgccatgaaagaagcaccttccatgttacctgcagaagggttgtgggac
gaattctgtgcacgctttccttacatcgaaactgatgaccaatcacgcgccattgctgat
gttttagaagatatgggtagtggccgccccatggatcgcctagtttgtggtgatgttgga
tttggtaaaacagaagttgctttaagggctgcatttgttgcagcgttgtcaggtatgcag
gttgctgtagttgtgccaacaactttgcttgcaagacagcattatatgagttttacaaaa
cgctttgaaggcttgcctgttaatatagctcaattatcacgcttattgacggcaaaacag
gctagtaaagtcagagagggcctgagtgacggtacaattgatattgtcataggcacacac
gctttgttagccaaaactatttcatttaatagacttggtcttctcgttattgatgaggag
caacattttggtgtttctcataaagaaaagctcaaaacattatgtgaggatgtacacgtc
ctgactctttctgcaacgccattgccgcgtacattacagctttcactgtctggtgtgcgt
gaaatgagccttattgcgacacctcctactgatcgtctctcagttcgtacattcattaca
ccgtttgatcgtgtgatgattcaggaagctatccagcgtgagcgctttagaggggggcag
attttttgtgttgtacctcgcttgtccgatatggggcctttgtcggagcgtcttaaggaa
attgttccggatgctacaattgcagaagcgcacgggcgtctttctcctactgagcttgaa
aaagttatgacggagttttctgaagggaaattcgacattcttctttcaactaatatcgtt
gagagtggcctcgatatgccgggggtaaacacaattataattcatcgggcagatcgattt
ggccttggccagctttatcagcttagagggcgtgtggggcgcggaaagcaaaggggctat
tcatatttgacctggccgcaaactcaccctctttcagccgcatcaataaaacgtttggaa
attatgcaaacgttggattcattgggagcgggatttgttttagcgtctcatgatttggat
atgagaggtgcgggcaacctcctgggtgaagaacaatccggtcatattaaggaagttggt
atagaattatatcaacaaatgcttcaggaagctgtcattgatttacgtaaagaaaggggc
aaagcagttacggaagatgagaaatggacccctattatttctctaggacttcctgtctta
ttacctgaaacgtacgtcactgatttgtcagttcgtttaagtctttatcgtcgtattgca
aatttaaaagatgaatctgagcttgatgccatgagggtagagcttgttgatcgttttgga
ccattacccacagaagtcgaaaatcttttagagattgttattcttaaaaaattatgtctg
gaagctggtgttgaaaggttggaagcaggtcctaaagggatggtgttgcagttccgtaat
aaccgttttgccaatcccgaagggcttttaaaatggattgatcgcaaccagaaagcaggt
gttaaaatcagatctgatcataaattagcgatgatcagagaaatgaaaaatgctgtcagg
ctctctatggcccgtaaaatacttacctcgctctgcaagttggttgaaaaagcgaatgag
gcataa
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