Bipolaris oryzae: COCMIDRAFT_2274
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Entry
COCMIDRAFT_2274 CDS
T03125
Name
(RefSeq) hypothetical protein
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
bor
Bipolaris oryzae
Pathway
bor03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
bor00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
COCMIDRAFT_2274
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bor03400
]
COCMIDRAFT_2274
Enzymes [BR:
bor01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
COCMIDRAFT_2274
DNA repair and recombination proteins [BR:
bor03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
COCMIDRAFT_2274
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_A_N
DNA_ligase_A_M
BRCT_2
DNA_ligase_A_C
RNA_ligase
LIG3_BRCT
BRCT
Bac_globin
Motif
Other DBs
NCBI-GeneID:
19120319
NCBI-ProteinID:
XP_007684583
JGI:
Cocmi1_2274
UniProt:
W6ZG11
LinkDB
All DBs
Position
Unknown
AA seq
993 aa
AA seq
DB search
MAEDTPMPDADAVRENTLMYSHDDDLDEKYPLRPLNLHKTLPFHTLFTDLFNPLMDTQKK
KQSVGPRRKVGPHGRGNLTPHEAKRNIVERFIANWRKQVGNDFYPAMRLIIPEKDRERAM
YGLKEKTIAKILIKLTRIGKDSDDAKHMLNWKLPSQLQKASAWSAGDFAGRCYEILASRQ
LKTEYSDMSIAEVNNALDKLSQVGTEEEQVKIFQRFYRRMNAEEMTWLIRMILRQMKIGA
TEKTLLDIWHPDAETLFNVSSNLRRVCWELFDHNIRLEGENTGLSLMQCFQPQLAQFQDK
VGSFQKMVTRFKGDSDDDTFWIEEKLDGERMQLHMVEDPEAPGGKSFGFWSRKAKDYTYL
YGKHFHGDEAGALTRFITDAFGKNVKNIILDGEMVTWDMETDHIVGFGTLKTAAISEKEN
KTNQETGQRPLFRVFDCVYLNDMLLTQYTLRDRRRALESAVKGVHRRLEVHPYIEARSHT
EIEPALRKVVAEASEGLVLKNPRSMYCLNQRNNDWMKVKPEYMSEFGESLDCIVVGGYFG
SGRRGGAHSSFLCALLTNKSAKPGDPKHEHCWSFFKVGGGFSSDDYAALRGRTQGKWHDW
DPRRPPPFIELGGHEQNRQHERPDQWIRPSDSVVLECKAASIESSDKFRFALTLRFPRFK
QLRTDKRWDQALSVQEFLEVKTKVEIEKSEKEKEFKIEQSRRKKARASRKPLAVMGNDTV
TTPYAGPESKIFDGLSFYVMTEQIYPVKKSKADLEVLIKANGGKLIQRDSTDKNLIIIAD
KRLIKVASLEKRATNNIVKPVWIQDCIAQNEADTGALPYLLPFEPNRHMFYLHDDDQFEI
ESNVDENGDPYARDITTVEEMRKLLDGMAKPESPATFQRQGFLKQLEDHGKPLEQLKTHM
FHSVKALFPDDVDNKDWSLKAQLAKNYLRFGDGLIADDEEEEGITHIIVPDERSSSRISN
ARISGLARIVGIGWVEKCLKEGTRLDEERYQWG
NT seq
2982 nt
NT seq
+upstream
nt +downstream
nt
atggcagaagatacgccaatgccggatgcagacgccgtacgggaaaatactctcatgtac
agccatgatgatgacttggacgagaaatacccgctgcggcctttgaatttacacaagaca
ctgccgtttcacacattgttcactgatcttttcaacccgctcatggacacgcaaaaaaag
aagcagtcggttggcccccggcgtaaggttggaccgcacggccgcggcaacctaacgcct
catgaagccaagcggaacatcgtcgagcgctttattgcgaattggcggaagcaggtgggg
aatgacttctatcctgcaatgcgcctcattattcccgagaaagaccgagagcgcgccatg
tacggtctgaaagagaagacaatagcaaaaatcttgatcaagcttacgagaattggcaag
gattcagatgatgcaaagcacatgctcaactggaaattgcctagtcagctgcaaaaggca
tcagcttggtctgctggtgactttgccggacggtgctatgagattctagcgtcacggcaa
ctcaagacagagtatagcgacatgagcattgcggaagtcaacaatgctctcgacaaacta
tcgcaagtcggtaccgaagaagagcaagtcaaaatcttccaaagattttaccgaaggatg
aatgccgaggaaatgacatggcttattcggatgattctccgtcagatgaagattggcgcg
actgagaagaccttgcttgatatctggcatccagatgcggaaacattattcaacgtgtcg
tcgaatcttcggcgtgtttgttgggagctttttgatcacaacatacgtcttgagggcgag
aatactggtcttagtctcatgcaatgcttccaaccgcaactagctcaatttcaggacaaa
gtaggctcgttccagaagatggttaccaggttcaaaggagattcagatgatgatacattc
tggattgaggagaaactcgacggtgaacgcatgcagctacacatggtagaggacccagaa
gcgccgggtgggaagtcgtttggcttctggtcgcgaaaggcgaaagactacacttatctc
tatggaaaacatttccacggcgacgaagctggagcactcacgcggttcataacagatgcg
tttggaaagaacgtgaagaacattatcctagacggcgaaatggttacctgggacatggag
actgatcacattgtcggttttggcactctcaagactgcagccatatccgagaaggagaac
aagacaaaccaagagactggccagcggccactgtttcgagtgtttgattgtgtgtacctg
aacgatatgttgctcacccagtatacgcttcgtgatcgccgtcgtgctctggaaagcgct
gtcaaaggtgtacaccgcagattagaagttcatccatacatcgaggcgcgttcgcatact
gagatcgagccggcgctgcggaaagtggttgctgaagcatccgagggcttggtgttaaag
aaccctcgctcaatgtattgcttgaatcaacgaaataacgattggatgaaggtgaagcca
gagtacatgtccgagtttggagagtctcttgactgcattgtcgttggagggtactttggc
tctggtcgccgtggaggtgctcactcatcttttctttgtgcactactcacgaacaagagc
gcaaagccaggagaccccaaacacgaacattgttggtcattcttcaaggttggtggtgga
tttagctcggacgactacgctgctttacgaggacgaacgcaaggaaaatggcatgattgg
gatcctcggcgtccaccgccattcatcgaactaggtggccacgagcagaatcggcaacat
gaaagaccggaccaatggattagaccaagtgactctgtcgtactggagtgcaaagccgcc
agcatcgagagcagtgacaagttccgctttgcattgacactccgctttccacgcttcaag
cagctcaggacagacaaacgatgggatcaggcactttccgtacaggagttccttgaagtc
aaaaccaaagtagagattgagaaatctgagaaggagaaggaattcaagatcgaacagtca
cgacgcaagaaagcgcgtgcatcgaggaagccgttggcagtgatgggcaacgatacggtg
acgacaccatatgcaggcccagagtctaaaatcttcgacgggctcagcttctacgtcatg
actgagcagatatacccagtgaagaaatccaaagctgacctagaggtgctcatcaaagcc
aatggtggcaaacttatccaacgcgactctacagacaagaatcttatcatcattgccgac
aaacggctgatcaaagttgcgtcgctggaaaagcgagctacaaacaacattgtcaagccg
gtctggatccaagactgtattgcacaaaatgaagcagacactggcgcattgccctaccta
cttccttttgaaccgaacaggcacatgttttacctccacgatgacgatcagttcgaaatt
gagagtaacgtagatgaaaatggcgatccttacgcacgcgatattacgaccgtggaagag
atgaggaaattgctagatgggatggcgaaaccggaaagtccagctacgttccagcgacaa
ggatttttgaaacagctggaagatcatggcaagcctttggagcagctgaagacccatatg
tttcactctgtcaaggctttattcccagatgatgtggataacaaagattggtcgttgaag
gcgcaactggcgaagaactatctccgttttggagatgggctgattgccgacgacgaggaa
gaagaggggatcacgcacatcatcgtaccagacgaaagatcttcatccaggatatcgaat
gcaagaatctctggacttgctcgaatagttggtataggatgggtggaaaagtgcttgaaa
gaaggtacaagacttgatgaagagagatatcagtggggatag
DBGET
integrated database retrieval system
