Bipolaris oryzae: COCMIDRAFT_38190
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Entry
COCMIDRAFT_38190 CDS
T03125
Name
(RefSeq) hypothetical protein
KO
K03144
transcription initiation factor TFIIH subunit 4
Organism
bor
Bipolaris oryzae
Pathway
bor03022
Basal transcription factors
bor03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
bor00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
COCMIDRAFT_38190
09124 Replication and repair
03420 Nucleotide excision repair
COCMIDRAFT_38190
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bor03021
]
COCMIDRAFT_38190
03400 DNA repair and recombination proteins [BR:
bor03400
]
COCMIDRAFT_38190
Transcription machinery [BR:
bor03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
COCMIDRAFT_38190
DNA repair and recombination proteins [BR:
bor03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
COCMIDRAFT_38190
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Tfb2
Tfb2_C
Helicase_C_3
Motif
Other DBs
NCBI-GeneID:
19123422
NCBI-ProteinID:
XP_007689565
JGI:
Cocmi1_38190
UniProt:
W6ZK02
LinkDB
All DBs
Position
Unknown
AA seq
482 aa
AA seq
DB search
MSASSSAQALEYLEGLPLATHKKLYEQPSTVLAVFRCMLPHLAKSIVMAMLYMPTPFPAA
DLDTWFKPTARKEKERATFTLDRLHIITSARQDNGTLSWTLNPGFQRSLRNAIEGSGTHR
SFGVPATKEESGKRVSIEFLDEYSRSQWEGILYYLVSGAAGLSKDSISRAEVGPGTKKLL
HTGDLVRTIHGSPRITKDGFSFVLQETNAQVWSLLIVYLKMTNELGMSETEVLSFLFMLG
SLELGQDYSTSTLSATQLQMLEDLSAMGLVYRSDRNAQTFYPTRLATTLTSDSGSAMSAS
SNDIAQASTSTTGPPTAANKGFIIIETNYRLYAYTNSLIQIAILSLFTKLQHRFPNLVSG
KLTKESVHKAVQAGITSAQIISYLTTYAHPQMQKTVPYIPPTVMDQIRLWEYEGERVETT
TGYLMREFGSDAEYRDVLNYASALGVLVWQNDANRCFFVSHVEQISAYLRKKKENRENAR
GR
NT seq
1449 nt
NT seq
+upstream
nt +downstream
nt
atgtcggcctcgtcttctgctcaggcgctggaataccttgagggtctcccgctggccaca
cacaagaagctgtatgagcagccttcgacagttctggcggtatttcgctgcatgttaccg
catcttgccaaatcaatagtcatggctatgctgtacatgcccactcccttccctgccgcc
gacctcgatacctggttcaaacccactgcgcgcaaagagaaagagcgggcgacctttact
ctcgaccgtctgcatatcattacctcggcgcgacaggacaacggcactctatcgtggaca
ctcaatccaggcttccagcgcagcctccgaaatgccatcgagggctctggcacccatcgt
tcttttggagtaccggcgacaaaagaagaaagtggaaagcgcgtcagtattgaatttttg
gacgagtattcgaggtcgcaatgggagggcatattgtactaccttgtgagcggtgcggct
ggtctcagcaaagacagcatctctagagctgaggttggtcctggcacaaaaaagctatta
catactggcgatctagtgcgtactatacatggcagtccaaggatcacaaaagatggcttc
tctttcgtgctacaagaaacgaatgcacaggtttggagtctgctgattgtctatttgaag
atgacaaacgagctcgggatgtctgaaaccgaagttctctcattccttttcatgcttggt
tctcttgaattgggccaggattactccacctccactctctcagcgacccaactccaaatg
ctcgaagatctctctgcaatgggcctcgtataccgctctgacaggaatgcgcaaaccttt
taccccacccggctagctacgacgctcacatcagattctggcagtgccatgtcggcatcc
tccaacgatattgcacaagcaagcacaagcaccaccggacctccaactgcagcaaacaag
ggcttcataatcatcgagaccaattaccgcctctatgcctacactaacagtctgattcaa
atcgccattctctctctcttcaccaaacttcagcatcgctttcccaacctcgtctcggga
aaactaacaaaggagtccgttcacaaagccgtccaggcaggcattacctcagcacaaatt
atctcctacctaaccacctatgcccacccgcagatgcaaaaaaccgtcccctatatcccg
ccaaccgtcatggaccaaattcgtctctgggaatatgagggcgagcgcgtggaaacgaca
acgggttacttaatgcgcgagtttggttcggacgccgagtatagagacgttttgaactat
gctagtgcgctgggtgtactggtctggcagaatgatgctaacaggtgttttttcgtcagc
catgtcgagcagattagtgcatacttgaggaagaagaaggagaatagagagaatgccagg
ggtcgataa
DBGET
integrated database retrieval system
