Bipolaris oryzae: COCMIDRAFT_38763
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Entry
COCMIDRAFT_38763 CDS
T03125
Name
(RefSeq) hypothetical protein
KO
K03142
transcription initiation factor TFIIH subunit 2
Organism
bor
Bipolaris oryzae
Pathway
bor03022
Basal transcription factors
bor03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
bor00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
COCMIDRAFT_38763
09124 Replication and repair
03420 Nucleotide excision repair
COCMIDRAFT_38763
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bor03021
]
COCMIDRAFT_38763
03400 DNA repair and recombination proteins [BR:
bor03400
]
COCMIDRAFT_38763
Transcription machinery [BR:
bor03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
COCMIDRAFT_38763
DNA repair and recombination proteins [BR:
bor03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
COCMIDRAFT_38763
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
FAA_hydrolase
Ssl1
C1_4
VWA_2
Rv2993c-like_N
DAP_B
Tfb4
Motif
Other DBs
NCBI-GeneID:
19123542
NCBI-ProteinID:
XP_007690196
JGI:
Cocmi1_38763
UniProt:
W6Z083
LinkDB
All DBs
Position
Unknown
AA seq
718 aa
AA seq
DB search
MADSDYDFEDEVSDDDYIGNKGSASNTRAQSTAATKRRKVEVPVKEAPQRKAWETEYSRT
VEKTIQPADDGSLGQSVQEREEERKRKRLRKDTKPFQRGIIRHVVLVLDLSEAMLEKDMR
PNRFITMINYTQDYIREFFEQNPISQMSVLGMYDECSRVGKSNTLPYAQSWHTRGYCRLR
QPAESGPWRHSPVCQGVCERPNTGDESEYTIATDQEMLRELLLATTTPPVIRQPLVTDKT
APVTTAQSSESAAALMMMGFPSRVVEDQLTMCACHGNLTMGGYTCSRCSAKVCSLPITCP
SCQLTLLLSTHLARSYHHLFPLRNWATVSWSRAREMGSKQCVGCLAAFSNPPNNAKENGE
AKRNSEAKATKRDDNDSEEQKASESGRYECRACESHFCIDCDMFAHMVLHNCPGCLGRLD
PNAAAISNGDVEMSAGRTMAAFERLIRFEDAEGKTLYGNLEKEIPTKEIQGSSVEVLEGD
VKSGFKKTGSKATVSKLLSPLPTTNIILCVGLNYRKHAQECNLQIPENPAIFMKPSDALA
GPLDDIPIHKTCQSQLDYEGELGIIIGRDCKNVAAADYASYVLGYTIGNDVSARNYQLPA
NVSGGQFGYAKSFDKFAPIGPCIASPAVVPDPHALTYWTKVNGEKRQETGTDDMIYTVGQ
IIEHLSRGTTLRAGTVILTGTPSGVGFFMEPKGFLKDGDVVEIYVQGIGSLVNTVRFE
NT seq
2157 nt
NT seq
+upstream
nt +downstream
nt
atggctgattccgattacgactttgaagacgaggtgtctgatgacgattacattggcaac
aaaggcagcgcctcgaacacgcgcgcgcagtccacggcagctaccaagaggcgaaaggta
gaggtaccagtcaaggaagcacctcaaaggaaggcatgggagacggagtactcgcgaaca
gtggagaagacgatccagccagcagatgatggtagtctggggcaaagtgtacaagagcgg
gaagaggagcgcaagcgcaagcggttgcgcaaagacaccaagccatttcagcgtggcata
ataagacatgtcgtactggtgctggatctctcagaggccatgttggaaaaggacatgcgc
cccaaccgtttcatcaccatgatcaactacacgcaggactacattcgcgagttcttcgag
caaaatcctatctcccaaatgagcgttctgggcatgtacgacgaatgctctcgagttggc
aagagcaacactctaccatacgcccagtcatggcacacgagaggttattgtcgtcttcgg
cagcctgctgagtctggaccctggcgacattcaccagtctgtcaaggcgtgtgtgagaga
ccgaatacgggcgacgaatccgaatatacaatcgccacagatcaagagatgcttcgggaa
ctgctcctagccacaacgacaccacctgtcatccgacagcctttggttacagataagact
gcgccagtaacgacagcgcaatcttcagaatcagctgctgcgctaatgatgatgggcttc
ccgtcgcgggtagtagaagatcagttgaccatgtgtgcatgccacggaaacttgacaatg
ggcggctatacgtgctctcggtgcagcgcaaaagtttgctctctacccatcacttgtccc
tcctgccaactcacgctcctcctctccactcacctggcacgctcgtatcaccatctcttc
cccctccgcaattgggccacagtgtcgtggtcgcgcgctcgtgagatgggcagcaaacag
tgcgtgggctgcttagctgcctttagcaatccaccgaacaatgccaaagagaacggtgag
gccaaacgaaactctgaggcaaaagccacaaaaagggacgacaatgatagcgaggagcag
aaagctagtgaaagtggcaggtatgaatgtagggcatgtgagagccatttttgcattgac
tgtgacatgtttgcgcatatggtactgcataactgcccaggatgcttgggaaggctagat
ccaaatgcggctgctataagcaatggggatgtggagatgagtgctggcagaaccatggcg
gcttttgaacgattgattcgattcgaggatgctgagggtaagaccctgtatggtaatcta
gagaaagaaatacctaccaaggagattcaggggagtagcgtcgaagtgcttgaaggcgat
gtaaagagtgggtttaaaaagactgggagcaaggccacagtttcaaagctactaagcccg
cttccaactacaaatatcattctctgcgttggactcaactaccgcaagcatgcccaagaa
tgcaatctccaaatacccgagaacccagccatcttcatgaaacccagcgacgcactcgca
ggccctctagacgacataccaatccacaaaacctgtcaatcccaactcgactacgaaggc
gagctcggcatcatcatcggccgcgattgcaaaaacgtcgctgcagcagactacgcctcg
tacgtcctgggctacaccatcggcaacgatgtttcagcacgcaactaccagctgccagca
aatgtgtccggcggccaattcggctacgcaaagtcctttgacaagtttgcccccatcggt
ccttgcattgcgagtcctgccgtcgtaccggacccgcatgcgctgacgtactggaccaaa
gtcaatggcgagaagaggcaggagacgggcaccgatgatatgatttataccgttggccag
atcatcgagcacttgagtcgcgggacgacgcttagggctggcacggtgattttgacaggg
acgccgagtggagttgggtttttcatggagccaaaggggttcttgaaggatggggatgtg
gtggagatttatgtgcaggggattgggagtttggttaatactgtgagatttgagtga
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integrated database retrieval system
