Bipolaris oryzae: COCMIDRAFT_89834
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Entry
COCMIDRAFT_89834 CDS
T03125
Name
(RefSeq) hypothetical protein
KO
K12811
ATP-dependent RNA helicase DDX46/PRP5 [EC:
5.6.2.7
]
Organism
bor
Bipolaris oryzae
Pathway
bor03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
bor00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
COCMIDRAFT_89834
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
bor03041
]
COCMIDRAFT_89834
Enzymes [BR:
bor01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
COCMIDRAFT_89834
Spliceosome [BR:
bor03041
]
Complex A
U2 snRNP components
U2 related factors
COCMIDRAFT_89834
Complex B
COCMIDRAFT_89834
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
OLD-like_TOPRIM
Motif
Other DBs
NCBI-GeneID:
19127555
NCBI-ProteinID:
XP_007685933
JGI:
Cocmi1_89834
UniProt:
W6Z721
LinkDB
All DBs
Position
Unknown
AA seq
1062 aa
AA seq
DB search
MPSSSPPPNSSSESLGSGARRVTTFLLRGFTDIFNTTDLRWRRATLIPQDAPPRDDRKKD
PETQAKDKLAERAAKLAEWKKRNAERLAKEKTDTQGSGASPADTAPATPSAAAATPPPQA
PASEAKLDTAKTKVPQKSVTEKLKQKQPEKSTFKLDASAAARPLDMAKPAGKTVTAASNQ
STAKGNGNIGSFGLKTKTAAEAEAETSRKAFLDEEGPTRKRKFQALPEFTANDEPEPEAD
GAEDDDAAMSGIGSDDEENNAELQARLEKRRADIANENSQDATMEEAPAVQVPAADKMDV
DETVGAEEDEIDPLDAFMADLTEPQPSRGAPSGQAMFADELEPVETSVEAQDLLELRAAK
KKKKEVATVDHDKVEYEPFRKSFYTEPLEVSQMTPEEVADLRHELDGIKVKPDDVPRPVT
KWAQMGLLQATMDVFTRVGYQKPTSIQAQAAPISLSGRDLIGVAKTGSGKTLAFGIPMIR
HILDQRPLKPSDGPIGLILAPTRELSLQIVHELKPFLSASGITIKCAYGGQPISDQIAMI
KRGGIHILCGTPGRLIDLMTANQGRVLSFRRITYVVLDEADRMFDMGFEPQVMKILANVR
PDRQTVLFSATMPKNMVALARKALNNPAEVTIGGRSKVAPEITQIISIVPNSYEKKINKL
LLHLGQLFSEDENAQVLIFTERQETAEDLLSKLYKAKYFSVNTIHGAKDQTDRNEAISDF
KQGVLSILIATSVAARGLDVPGLALVLNFDCPTHLEDYVHRCGRTGRAGNKGTAITLIEN
PGQERFAIHVVKALKESGAEVLEKLQEMADTFHEKAKAGTEKYYGGFGGKGLDRLDATRA
LEKKREKRQLKLEGIEDSDDEEEILPIVKKPEVTGPGAAKAAEGNTPAAEVEDQPHWMKL
LNSKIVVNKTERPEAAATGKPMSARERAMAAASKVDGRLSKKGMIHAGQPIDNKGPDAGL
YHSTIEINDFPQKARWAVTNRTNVAKILDQTGVSITTKGNFYPPGKQPGENDLPKLYILV
EGDTENIVTQAMMELTRLLREGTIAAEDASTTRTATGRYSVV
NT seq
3189 nt
NT seq
+upstream
nt +downstream
nt
atgccctcgagcagtccgccacctaattcgtcttctgaatcgctgggctctggcgccagg
cgtgtgacaacctttctcttgcgtggatttacagacatttttaataccaccgacttaaga
tggcgacgcgccacgctgattcctcaagatgctcccccgcgcgacgacaggaagaaggac
cctgagacacaagccaaggacaagctcgctgaacgtgcagcaaagctggccgaatggaag
aagcgcaatgctgagcgccttgccaaagaaaagacagatacacagggctctggtgcctcg
ccagccgacactgcacctgcaactccctccgctgctgctgcgacgccgcctccacaggcc
ccagcaagtgaggccaagcttgacaccgctaagactaaagttccgcagaaaagcgttact
gagaaactcaaacagaagcagcccgagaagtcgaccttcaagctggatgcttctgctgcc
gcccgccccttggacatggccaagcctgctggcaagacagtgacggccgctagcaatcaa
tcaaccgccaagggcaacggcaacattggctcttttggcctcaagactaagacagcggca
gaagccgaggctgaaacttcaagaaaagccttcctcgacgaagaaggcccaacgcgaaag
cgcaagtttcaagccctccccgaatttactgcgaacgacgaacctgaacccgaagctgac
ggtgccgaagacgatgacgctgcaatgagtggtattggaagtgatgatgaagagaacaat
gcggagctccaagctcgccttgagaagcgtcgcgcggatatagccaacgagaacagccaa
gacgctaccatggaagaagcacctgccgtccaagtccccgccgccgacaagatggacgtt
gacgaaactgtaggggccgaagaagacgaaatcgatcctctcgatgccttcatggccgac
ttgaccgaaccacaacccagccgcggtgcaccttcgggccaggccatgttcgccgacgag
ctcgaacccgttgagacctctgttgaggcgcaagatcttcttgaacttcgtgctgccaag
aaaaagaagaaggaggttgccactgttgaccacgataaagttgagtacgagccgttccga
aaatctttttacactgagccgctcgaggtttctcagatgacgccagaagaagttgccgat
ctccgtcatgagcttgacggcatcaaagtgaagccagatgatgtacctcgacccgtcacc
aagtgggcccagatgggcttgctgcaggcaaccatggatgtcttcactcgcgtaggctac
cagaagcccacatctatccaggcacaagctgctcccatctctctttctggacgtgacctc
atcggtgtcgcaaaaactggttctggaaagacacttgcgttcggtatacctatgattcgt
cacattcttgatcaacgcccactgaagccgtctgatggtcctattggactgatacttgct
cccactcgagagttgtcattgcaaattgtccatgagctcaagccgttcctctcagcttct
ggcataaccatcaaatgcgcttacggtggacagcctatctccgaccagattgctatgatt
aagcgtggtggcatacacattctctgtggaacacccggtcgcctgatcgatttgatgact
gcaaaccagggtcgtgtgctctccttccgccgcattacctatgttgttcttgatgaggct
gatcgcatgttcgacatgggttttgaaccacaagtcatgaagattcttgcaaacgtgcgc
ccagatcgccaaaccgtgctcttctcagcaaccatgccaaagaacatggttgcattggcc
cgcaaagccctgaacaatccagcagaagtgacaatcggtggtagatccaaagtggcacct
gagattacccagatcatttccattgttcctaatagttatgagaagaagatcaacaagttg
ctcctgcatctcggccagctcttctccgaggatgagaacgcacaggtattaatatttacg
gagcggcaggaaactgcggaagatttgttatctaagctctacaaggccaagtatttctct
gttaatacgattcacggagctaaagatcagactgatcgtaacgaagcgattagtgatttc
aagcagggtgttctttctatcctcattgccacgtctgtagcagcacgtggtcttgacgtc
cctggtctagcactcgtattgaactttgactgcccaactcacttggaagattatgttcac
aggtgcggtcgaactggtcgtgcaggtaacaagggtactgctatcacccttattgagaac
cccggccaagagcgcttcgctatccatgttgtcaaagcactaaaggaaagcggagcagaa
gttcttgaaaagcttcaagaaatggccgataccttccatgagaaggcaaaggcaggtacc
gagaagtactacggtggcttcggtggtaaaggtctcgatcgacttgatgcaactcgtgct
cttgagaagaagcgcgagaagcgtcaacttaagctagaaggtattgaagacagcgatgac
gaagaagagattctgccgatcgtcaagaaacccgaggttactggtcctggcgcggccaag
gctgctgaaggaaatacacctgctgctgaagtcgaggatcaaccacactggatgaagcta
cttaacagcaagattgtcgtcaacaagactgagcgtcccgaagctgctgccactggcaag
ccgatgagtgcaagggagagggcgatggctgctgcctccaaggtcgacggtaggctcagc
aagaagggcatgatccacgcgggccagcccattgacaacaaaggccctgacgctggtctc
taccattcgactattgagattaacgacttcccccagaaagctcgatgggccgtcaccaat
cgaaccaatgtggccaagattctggatcagactggtgtctcgattacgacaaagggtaat
ttttacccacctggcaagcagcctggtgagaatgatcttcctaagctgtacattctggtt
gagggagatacggagaacattgtcacacaggctatgatggaactcacccgcctcctgcgc
gaaggtacaattgcggcagaagatgcatctacgactcgtaccgccactggtcgatacagc
gttgtttga
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integrated database retrieval system
