Heyndrickxia oleronia: I5818_11010
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Entry
I5818_11010 CDS
T07202
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
bou
Heyndrickxia oleronia
Pathway
bou03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
bou00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
I5818_11010
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bou03400
]
I5818_11010
Enzymes [BR:
bou01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
I5818_11010
DNA repair and recombination proteins [BR:
bou03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
I5818_11010
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_ligase_A_M
RNA_ligase
mRNA_cap_enzyme
Motif
Other DBs
NCBI-ProteinID:
QQZ06890
LinkDB
All DBs
Position
complement(2193280..2195118)
Genome browser
AA seq
612 aa
AA seq
DB search
MKPMLPTLKSIAPLTSDWLFEIKYDGFRAILDWDHDTIHLWSRNEKDLLPQFPEIKEYLL
SIYDQFKDILPLIFDGELVVLENEGKANFGELQKRGRMKSHDRIQQVAYKRPCTYLVFDL
LTINGNALIDKSYLERKKMLKGLFVTYQLPLNPTSGTFELLQYIPNEQHFDTIWEQVTTD
DGEGIIAKLKKSKWEIGKRTETWLKIKNWKKVSCFITAFDTSNGYYHVGVFKGEQIYQIG
LFLFSLDPDQKKALSQVIKANALNNQNGVLNIHPSICVDIHYLEWYEEQLREPHFHEFRF
DLSPESCTYEQFLLDEAAIPREITVTHPDKPLWEKEQIKKLDFIRYMREISPFILPFLRN
RTLTVIRYPHGVFGEPFYQKNCPDYAPNFIQTYHQENIDYIVCNDLKTLMWLANQLAIEY
HIPFSTINNPYVSEIVFDLDPPSRNEFHLAVTASLMMKKIFDQLNIISFIKTSGNKGLQI
YIPLIDGTYTWSDTRLFTEFIANYLVTERSDLFTIERMKKKRNGRLYVDFIQHAEGKTII
APYSMRGHSDALIATPLFWDEVNENLNPESFTIPTVLHRVNTLGCPFANYVKAKTIQVFD
PVLNFLKANNLK
NT seq
1839 nt
NT seq
+upstream
nt +downstream
nt
atgaaaccgatgctcccaactttgaaatcaattgctcctctcacttcagattggctattt
gaaatcaaatatgatggttttcgagctattttagactgggatcatgacacaatacattta
tggagcagaaatgaaaaagatctacttccacagtttccagaaattaaagagtatttatta
agtatttacgatcaattcaaagatatacttccattaatatttgacggtgaactagttgtt
ttggaaaatgaaggaaaggcgaattttggagaattacaaaaaagaggtcgtatgaagtca
catgatcgaattcagcaagttgcctataaaagaccatgcacttacttagtctttgatcta
ttaaccattaatggtaatgccctcattgataaaagttatttagaacgaaaaaaaatgtta
aagggcttgtttgtaacttaccaattacctctaaacccgacatctggtacttttgaacta
cttcaatatattccaaatgaacaacattttgatactatatgggaacaagtcacaacggat
gacggagagggcatcattgcaaaacttaaaaaaagtaaatgggaaattggtaaacggaca
gaaacatggttaaaaataaaaaattggaagaaagtttcatgctttattactgcattcgat
acctccaatggatattatcatgttggtgtttttaagggagaacagatctaccaaataggc
ttatttttattcagtctagatcctgatcaaaaaaaagcattgagtcaagtcattaaggca
aatgcacttaacaatcagaatggtgtccttaacatccatccttcgatatgtgttgatatc
cattatttggagtggtatgaggaacagttacgagaaccacattttcatgagtttcgtttt
gatttatcaccagaatcctgtacatatgaacagtttcttttagatgaagcagctatacca
agggaaattacggtgacccacccagataaaccactttgggaaaaggagcaaataaaaaag
ttagattttattcgatatatgagagaaatttcgccatttattctgccttttctacgtaat
cgtacattaactgtaattcgttatccccatggtgtatttggtgaacctttttatcaaaaa
aattgtcctgattacgcaccgaattttattcaaacataccatcaggaaaacatagattat
attgtttgtaatgatttaaaaacattaatgtggttggccaaccaattagcaattgaatac
catataccattttctactataaataatccttatgtgagcgagatcgtttttgacttggat
cctccatctagaaacgagttccacttagcggttacagctagcctaatgatgaagaaaata
tttgatcaattaaatattattagctttattaaaacatcaggaaataaaggacttcaaata
tatataccactgattgatggtacatatacttggagtgatactcgattatttacggaattt
atcgctaattatcttgtaacagaaagatccgacctctttactattgaacgaatgaagaaa
aagagaaatggacgtttatatgttgattttatacagcatgcagaaggaaagaccattatt
gctccgtattcaatgagaggtcatagtgatgcacttattgcaacgccattgttttgggac
gaggtgaatgaaaatcttaatccagaatcctttacgattcctaccgtcctgcatcgggtt
aataccctcggatgtccatttgctaactatgtaaaagcaaaaacaatacaagttttcgat
cctgtacttaactttttaaaagcaaataatttgaaataa
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