Brucepastera parasyntrophica: K7I13_00480
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Entry
K7I13_00480 CDS
T08309
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
bpaa
Brucepastera parasyntrophica
Pathway
bpaa03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
bpaa00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
K7I13_00480 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bpaa03400
]
K7I13_00480 (mfd)
Enzymes [BR:
bpaa01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
K7I13_00480 (mfd)
DNA repair and recombination proteins [BR:
bpaa03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
K7I13_00480 (mfd)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
Helicase_C
CarD_TRCF_RID
UvrB_inter
ResIII
UB2H
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
ULQ59867
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Position
106808..110299
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AA seq
1163 aa
AA seq
DB search
MDVSVLKKAIHNWSSMSAVLSELNEQKWPYEIEGVQGGLHGFFLSEYTDTFPGLVVIIVP
TEKEIESLSQDLDLTGLDFDIFPWWGTIAYRPVPPGAVVFGQRAARLAELCMPIKSQNEK
PHILVMTQRAFLTPVPPPDYFRSLLFHLSKGDDFDSAALAEKLALYGYTRVPRVTVRGEF
ALRGEVLDVFLPGEMYAHRIVFDFTKVEQIKLFNTADQSSVETLDEVVLYPAKEVVWDQT
NIAHLSGKLASLPEFGNSPQEIAGRLTDQGTFEGEEMFFPLAFSRHYSVLDYISNYNNES
VFDPAVFYFDYDRLENAQETIEREYLGLYRKARGAAGRDSLNPDQYGGKNTLPSFEVPEP
QRILLDFRKLCASYTKSLLFRTIHKESGAGVSYLRLSCDPPRSFFGNITYLKEELENLIS
DDWRIYIFAESEHQALRIREILKDFTVTVIPLNLSSGFGIPDLKILVIQENEIFGRRRHI
PKSVKHAKSSVIDTFVELNPEDYVVHVNYGIGQFKGIERVRALGNERDYIKLEYADNETV
FIPIEQVNLIQRYIGNEGENPRLDRLGSKSWENRKNRVKKSVEDIAQRLIDLYSHRKASR
GFAFPKDTEWQIAFEAAFPYEETEDQLTVIKEIKADMERPVPMDRLICGDVGYGKTEVAM
RAAFKAVMGGKQVAFLAPTTILAEQHYETCIERFEKFPVRIAQLSRFISPGEQKKILERL
SNGEIDILIGTHRIIQKDVRFKNLGLMIVDEEQRFGVKDKERLKEMRTNIDSLALSATPI
PRTLHMSLLKIRDMSLLTTPPQNRHPIETIIGEFSPERIAEAIRFEVERGGQVFYLHNRV
ETLTETRIMLEKLVPEMLIDSAHGQMSSSHLEDIFHRFKMGGFHVLIATTIIENGIDIPN
VNTIIIDRANMYGVSQLYQLRGRVGRSYRKAYAYLFYPEDRSLSEIAIKRLQVISDFTEL
GSGFKIAMKDMEIRGAGNLLGKEQSGDIYSVGFDLYLRLLEEAIQKLQDSDYVAEAEVWL
ELEYTGFIPDSYIPVAQTKMEVYKKIAAISTQDELDSVYLELLDRFGPIPEELHSLLALA
EIRIICRNLSISSLNEKQGSVRVEFSKVAKVSVDRLLRMMQESAGRVKLDPLHPNVLILE
TGKIGLKEKSEFIREKLERLSAG
NT seq
3492 nt
NT seq
+upstream
nt +downstream
nt
atggatgtcagcgtacttaagaaagcgatacataactggtcatcaatgtctgcggttctt
tcagaattaaatgaacagaaatggccctatgaaattgaaggtgttcagggcggactgcac
ggtttttttctttccgaatatacggatacttttcccggcctggtagttatcattgttccc
acggaaaaggaaattgagagcctgtcccaggatttggacctgaccggccttgattttgat
atttttccgtggtgggggactatagcgtacagacccgttccgccgggggctgtggtattc
ggacagcgagcggcccgtctagcggaactttgcatgccaataaaaagccagaatgaaaaa
ccgcatatcctggtaatgactcagcgggcctttcttactcctgttcctcctcccgattac
ttccggtcactgcttttccatctttccaaaggcgatgattttgattccgcggctcttgcc
gaaaagctggcattatacggatatacccgggttccccgggttacggtccggggggaattt
gccctgcgcggggaggtcctcgacgtattccttcccggcgagatgtatgcccaccgaatt
gtttttgatttcacaaaagtagaacagataaaactgtttaatacggcagaccagagttct
gtggaaacccttgatgaagttgtcctgtatccggcaaaggaagttgtgtgggatcagact
aatatagcccacctttccggcaaactggcttcactgccggaattcggaaactcgccgcag
gaaatagctggccggcttactgatcagggaacctttgagggtgaggaaatgtttttcccg
cttgctttcagcagacattattcggtccttgattatatttccaattataataatgaatcg
gtctttgatcccgctgttttttattttgattatgaccgtctggaaaatgcccaggaaacc
atcgagcgggagtatcttggactctacagaaaagcccgcggcgccgcgggccgggacagt
ctcaatccggatcaatacggcgggaaaaataccctcccttcctttgaggttccggagccg
cagcgtattctccttgatttcagaaaactctgcgcttcatacacaaaaagtctgcttttc
aggacaattcataaagaatccggcgccggtgtcagttatctgaggctctcctgcgatcct
cccaggagttttttcggaaatatcacatatctgaaagaagaacttgaaaatcttatcagt
gatgactggcgcatttatatttttgccgaaagcgagcatcaggccctgagaatacgggaa
attctcaaggattttaccgttactgttattcctctcaatctgtcttccgggtttggaatt
cccgatctgaaaattctcgtaatacaggaaaatgaaattttcggacggcgcagacatatc
ccgaaatcggtaaagcatgcaaaaagttccgtaatagatacttttgtggaactgaatccc
gaggactatgtcgtacatgtcaattatggtattggccagtttaaggggattgaacgggtc
cgcgccctcggaaatgaacgcgattacattaaacttgaatacgcggataatgaaactgtt
tttattccgattgaacaggtcaatctcatccagcggtatatcggcaatgaaggtgaaaat
ccccgtcttgaccggctgggatcaaaatcctgggaaaacaggaaaaacagggtaaaaaag
tcggtcgaggatattgcgcagaggctgattgatctgtattcacaccggaaagcttcccgg
ggttttgcctttccgaaggatacggaatggcagatcgcttttgaggccgcttttccctac
gaagaaacagaggatcagctgacagtaatcaaggaaataaaagccgatatggagagaccg
gttcccatggaccggctgatatgcggtgatgtcggttacggaaaaaccgaagttgccatg
cgcgccgcctttaaggctgttatgggagggaaacaggttgcctttcttgctccgaccact
attcttgctgagcagcattatgaaacctgtattgagcgttttgaaaaatttcccgtccgg
attgcgcagttatcccgttttatttcaccgggagaacagaaaaaaatacttgagcggctg
tcaaacggcgaaatcgatattctgataggaacgcacaggataatccagaaggatgtccgg
tttaaaaatctggggcttatgattgtcgacgaggaacagcgttttggggtcaaggacaag
gaacggctcaaggaaatgcggacaaatattgacagcctggcattgagcgcgacacccata
ccccggacccttcacatgagtctgctcaaaatccgtgatatgagtcttttaacgactccg
ccccaaaaccgtcatcccatagaaactattatcggcgagttcagcccggaacggatcgcg
gaggcgatccgatttgaggttgaacggggcgggcaggttttttatctgcacaaccgggtc
gaaacacttaccgaaacacggataatgctggaaaagctggttcccgaaatgctgatcgat
tcggcgcacggccaaatgtcttcctctcatctggaggatatatttcaccgcttcaaaatg
ggcggtttccatgttctcattgcaacgacaattatagaaaacggtatagatattccaaat
gtaaatactattattattgaccgagcaaacatgtatggagtctcccagttatatcagctc
aggggacgggtagggcgctcctacagaaaagcctatgcctatctcttttatccggaagac
agatccctttccgaaatagccataaagcgcctgcaggttatttccgattttactgaactc
ggttcaggttttaaaatcgcaatgaaagacatggaaatccgcggagcgggaaatctgctt
ggcaaggaacagtccggcgacatttattcagtcggctttgatctgtacctgcgccttctt
gaagaagcaattcaaaagcttcaggattccgactatgtggctgaagctgaggtatggctt
gaacttgagtataccggatttattccggattcctatataccggttgcccagaccaagatg
gaagtgtataagaaaatagccgcaatttcgactcaggatgaacttgacagtgtatacctt
gaactgctcgaccggttcgggcctattcctgaggaattgcacagcctccttgctcttgcg
gaaataagaattatttgccgcaatctttcaatctcgagtcttaatgaaaagcagggcagc
gtccgggtcgagttttcaaaggtcgcaaaggtatcggtggacaggcttttgcgtatgatg
caggaatcagcgggccgggttaaacttgaccctctccatccgaatgttctcatccttgaa
acgggaaaaataggcttaaaggaaaaaagcgaatttatccgtgaaaaactggaacgtctt
tccgcggggtaa
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