Brevibacillus parabrevis: PSE45_16795
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Entry
PSE45_16795 CDS
T08846
Symbol
ligD
Name
(GenBank) non-homologous end-joining DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
bpab
Brevibacillus parabrevis
Pathway
bpab03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
bpab00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
PSE45_16795 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bpab03400
]
PSE45_16795 (ligD)
Enzymes [BR:
bpab01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
PSE45_16795 (ligD)
DNA repair and recombination proteins [BR:
bpab03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
PSE45_16795 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
Motif
Other DBs
NCBI-ProteinID:
WDV93315
LinkDB
All DBs
Position
3665691..3666593
Genome browser
AA seq
300 aa
AA seq
DB search
MAYATKEYELTIAERTISISNPEKPLWPEANVTKLDYLRYLLTVAPYMLRYAHDRLLTVI
RYPHGIHDKHFYQKNIPDYAPDWIKTHTWENVRYVLCNDEATLLWMANQAALEWHVSFHL
AADETPTELVFDLDPSTDDFSVVIESALLLKELLDELKLPAYVKTSGASGLQVYVPIERR
YAFEQTRQVGHFIASYLVSKHPAFLTIERMVKNRGTKLYIDYLQHWRGKTLPAPYSTRAK
KLATVSAPLRWEELPQAHPSAYTVHTVPERLRELGDLFSAVSQPDKPASLDPILDFLHAR
NT seq
903 nt
NT seq
+upstream
nt +downstream
nt
gtggcttatgcaaccaaagaatacgagctgaccatcgccgaacgtacaatcagcatcagc
aaccctgaaaaaccgctctggccggaagcaaatgtgaccaagctcgattacttgcgttac
ttgctgaccgttgctccctacatgctccgctacgcccatgatcggctgctcaccgtgatc
cgctacccgcacgggattcacgacaagcatttttatcaaaaaaacatcccggactatgcg
cctgactggatcaagactcatacgtgggaaaacgttcgctatgtgttgtgcaacgatgaa
gccacgctgctctggatggcgaatcaggccgctttggagtggcatgtttcctttcacctg
gctgccgacgaaacaccgacagagctggtgtttgatctcgatccatccacagacgacttc
tcggtggtgattgagtcagctcttctattaaaagaactgctcgatgagctgaagctgccc
gcttacgtcaagacgtccggtgcaagcggcctgcaagtgtacgttccgattgaacggcgc
tatgcgtttgaacaaacgagacaggtcgggcactttatcgcttcctatctcgtcagcaag
catcccgcttttttgactatcgagcgcatggtcaaaaaccgcggcaccaagctgtacatc
gactacctccagcattggcggggcaagacacttcctgcgccttattccacacgggcaaaa
aaacttgcgaccgtctctgctccgctgcgctgggaagagctgccgcaggctcatccctcc
gcttacaccgtgcacaccgtcccggagcggctacgcgagctgggagatctcttttccgcc
gtctcccaaccggacaagccagcatcccttgatcccatccttgactttttgcacgctcgc
tag
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