KEGG   Bradyrhizobium pachyrhizi: QA639_32160
Entry
QA639_32160       CDS       T09303                                 
Symbol
ligD
Name
(GenBank) DNA ligase D
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
bpah  Bradyrhizobium pachyrhizi
Pathway
bpah03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:bpah00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    QA639_32160 (ligD)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:bpah03400]
    QA639_32160 (ligD)
Enzymes [BR:bpah01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     QA639_32160 (ligD)
DNA repair and recombination proteins [BR:bpah03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     QA639_32160 (ligD)
SSDB
Motif
Pfam: LigD_Prim-Pol LigD_N DNA_ligase_A_C DNA_ligase_A_M
Other DBs
NCBI-ProteinID: WFU54265
LinkDB
Position
complement(6779169..6781811)
AA seq 880 aa
MSLRNLSTYRKKRDFEKTSEPSGDVKVAPSKQRRFVIQKHDATRLHYDLRLEFDGVFKSW
AVTRGPSLDPHDKRLAVEVEDHPLDYGDFEGTIPEGQYGGGTVQLWDRGTWESDDPERGF
KKGDLKFTLEGDKLHGSWVLVRMKGDRFGGKRTNWLLIKHRDEYAVDGNGEEVLDEDRSV
ASGRSMAQIAAGKGRAPKPFMLAKGNGKAKADAVWQSNHGMAADARARTKAPAPKERLKV
ARQAKPKQVSEMPDFVAPQLCAAVESPPNGTGWCHEIKFDGYRVQLRVEDGEAVLKTRKG
LDWTAKFGAIVKEASKLPDALIDGEIVALDKNGTPHFSTLQAALSDGKTDRLIFYAFDLL
FAGTEDLRPLPLAERKTRLKQLLAARKGKNLLIRYVEHFEQRGEAVLDSARKLGLEGIVS
KRLDGAYRSGRSDDWTKAKIRAGHEVVLGGWKTTNGKFRSLMAGVYRGDHLAFVGIVGTG
FGQDTVRRIMPALKAAEADKSPFGGKDAPKKTRDVHWLKPELVAEIEFAGWTDAGNIRQA
AFKGLRQDKPAHEVEAERPVVTKVVKPMAKGVAKKGAGKASSEVMGVVISHPDKALWPDA
GDGEPVTKLDLANYFEAVGEWMISYLKGRPCSIVRAPDGIKGETFFQRHAMAGTSKLLKL
AKVSGDRKPYLQIDQIEGLAAVAQLGGLELHPWNCAPDAYDTPGRLVFDLDPAPDVAFTD
VIDAAKDMRQRLTAVGLESFCKTTGGKGLHVVTPLLAGARDKVTWKEAKAFAQAVCQWMA
EDDPERYLINMSKAKRTGKIFLDYLRNDRMSTAVAVLSPRARPGATVSMPLTWSQLRGDL
DPKKFTLRTVPALLAKTKAWDGYEDAASSIKSAMKKLAAQ
NT seq 2643 nt   +upstreamnt  +downstreamnt
gtgtcgctgagaaacctgtccacctatcgcaagaagcgcgacttcgagaagaccagcgag
ccgtcaggcgacgtcaaggtcgcacccagcaagcagcggcgcttcgtcatccagaagcac
gacgcgacgcggttgcattacgatctgcggctcgaattcgacggcgtcttcaagtcctgg
gcggtgacgcgcgggccttcgctcgatccgcatgacaagcggctggcggtggaggtcgag
gatcatccgctcgactatggcgatttcgaaggcaccattcccgaaggccagtatggcggc
ggcacggtgcaactgtgggatcgcggcacctgggaatcggacgatcccgagcgcggcttc
aagaagggcgacctgaagttcacgcttgagggcgacaagctgcacggcagctgggtactg
gtccggatgaagggcgaccgctttggcggcaagcgcaccaactggctcctgatcaagcac
cgcgacgaatatgccgttgacggcaacggcgaggaggtcctcgatgaggaccgttcggtc
gcttccggacgctcgatggcgcagatcgcggccggcaagggccgggcgcccaagccgttc
atgctggccaagggcaacggcaaggccaaggcggacgcggtctggcagtccaaccacggc
atggctgcggacgcgcgcgccaggaccaaggcgccggcgcccaaggagcggctgaaagtg
gcgcggcaggcgaaaccgaagcaggtatcggagatgcccgatttcgtcgcgccgcagctc
tgcgccgcggtggagtctccacccaatggcacgggctggtgccacgagatcaagttcgac
ggttaccgcgtgcagctccgcgtcgaagacggcgaggccgtgctgaagacgcgcaagggg
ctcgactggaccgccaagttcggcgcgatcgtgaaggaggcttcgaagctgccggacgcg
ctgatcgatggcgagatcgtcgcgctcgacaagaacggcacgccgcatttttcgacgctg
caggctgcgctctccgacggcaagacggatcggctgatcttctacgccttcgacctgctg
ttcgccggcaccgaggacctgcgcccgctgccgctcgccgagcgcaagacgcggctgaag
cagttgctcgcggcgcgcaagggcaagaacctcctgatccgctatgtcgagcatttcgag
cagcgcggcgaggcggtgctggattccgcacgcaagctcggtctcgaaggcatcgtctcc
aagcggctcgacggcgcctaccgttccggccgctccgacgactggaccaaggcaaaaatc
cgcgccggccatgaggtggtgctcggcggctggaagaccaccaatggcaaattccgctcg
ctgatggcgggcgtctatcgcggcgatcatctggcttttgtcggcatcgtcggcaccggc
ttcggccaggacacggtccgccgcatcatgccggcgctgaaggcggcggaggcggacaag
agcccgttcggcggcaaggacgcgccgaagaagacccgcgacgtgcactggctcaagccg
gagctggtcgccgagatcgagttcgccggctggaccgacgccggcaatatccgccaggcc
gccttcaagggcctgcgccaggacaagccggcgcacgaggtcgaggccgagcggccggtt
gtaaccaaagtggtgaagccgatggccaagggcgtggcgaagaagggcgccgggaaggcg
tccagcgaggtgatgggtgtcgtcatctcgcacccggacaaggcgctgtggcctgatgcg
ggcgatggcgaaccggtgaccaagctcgacctcgcgaactatttcgaggcggttggcgaa
tggatgatttcctatctcaagggccggccgtgctcgatcgtgcgtgcgcccgacggcatc
aagggcgagaccttcttccagcgccatgcgatggccggcacatcaaaattgctcaagctt
gcgaaggtctcgggcgaccgcaaaccctatttgcagatcgaccagatcgagggcctggcg
gcggtcgcgcagctcggcggcctcgaactgcatccctggaattgcgcgccggatgcctat
gacacgccgggccggctggtgttcgatctcgatcccgcgcccgatgtcgcgttcaccgac
gtgatcgacgccgccaaggatatgcggcaacggctgaccgcggtcggcctcgaaagcttc
tgcaagaccacgggcggcaaaggtctgcacgtcgtcacgccgctgctcgccggtgccagg
gacaaggtgacgtggaaggaggccaaggcgttcgcgcaggcggtctgccagtggatggcg
gaggacgatcccgagcgctatctgatcaacatgtccaaggccaagcgcacgggaaagatc
ttcctcgactatttgcgcaacgacaggatgtcgacggcggtcgcggtgttgtcgccgcgg
gcgcgtccgggggcgacggtgtcgatgccgctgacctggtcgcagctgcgcggtgatctc
gatccgaagaaattcacgctgcgcaccgtgccggccttgctcgcgaagacgaaggcctgg
gacggctacgaggacgcagcgtcgtcgatcaaatcggcgatgaagaagctcgcggcgcag
tag

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