Bradyrhizobium pachyrhizi: QA639_32160
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Entry
QA639_32160 CDS
T09303
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
bpah
Bradyrhizobium pachyrhizi
Pathway
bpah03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
bpah00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
QA639_32160 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bpah03400
]
QA639_32160 (ligD)
Enzymes [BR:
bpah01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
QA639_32160 (ligD)
DNA repair and recombination proteins [BR:
bpah03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
QA639_32160 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
Motif
Other DBs
NCBI-ProteinID:
WFU54265
LinkDB
All DBs
Position
complement(6779169..6781811)
Genome browser
AA seq
880 aa
AA seq
DB search
MSLRNLSTYRKKRDFEKTSEPSGDVKVAPSKQRRFVIQKHDATRLHYDLRLEFDGVFKSW
AVTRGPSLDPHDKRLAVEVEDHPLDYGDFEGTIPEGQYGGGTVQLWDRGTWESDDPERGF
KKGDLKFTLEGDKLHGSWVLVRMKGDRFGGKRTNWLLIKHRDEYAVDGNGEEVLDEDRSV
ASGRSMAQIAAGKGRAPKPFMLAKGNGKAKADAVWQSNHGMAADARARTKAPAPKERLKV
ARQAKPKQVSEMPDFVAPQLCAAVESPPNGTGWCHEIKFDGYRVQLRVEDGEAVLKTRKG
LDWTAKFGAIVKEASKLPDALIDGEIVALDKNGTPHFSTLQAALSDGKTDRLIFYAFDLL
FAGTEDLRPLPLAERKTRLKQLLAARKGKNLLIRYVEHFEQRGEAVLDSARKLGLEGIVS
KRLDGAYRSGRSDDWTKAKIRAGHEVVLGGWKTTNGKFRSLMAGVYRGDHLAFVGIVGTG
FGQDTVRRIMPALKAAEADKSPFGGKDAPKKTRDVHWLKPELVAEIEFAGWTDAGNIRQA
AFKGLRQDKPAHEVEAERPVVTKVVKPMAKGVAKKGAGKASSEVMGVVISHPDKALWPDA
GDGEPVTKLDLANYFEAVGEWMISYLKGRPCSIVRAPDGIKGETFFQRHAMAGTSKLLKL
AKVSGDRKPYLQIDQIEGLAAVAQLGGLELHPWNCAPDAYDTPGRLVFDLDPAPDVAFTD
VIDAAKDMRQRLTAVGLESFCKTTGGKGLHVVTPLLAGARDKVTWKEAKAFAQAVCQWMA
EDDPERYLINMSKAKRTGKIFLDYLRNDRMSTAVAVLSPRARPGATVSMPLTWSQLRGDL
DPKKFTLRTVPALLAKTKAWDGYEDAASSIKSAMKKLAAQ
NT seq
2643 nt
NT seq
+upstream
nt +downstream
nt
gtgtcgctgagaaacctgtccacctatcgcaagaagcgcgacttcgagaagaccagcgag
ccgtcaggcgacgtcaaggtcgcacccagcaagcagcggcgcttcgtcatccagaagcac
gacgcgacgcggttgcattacgatctgcggctcgaattcgacggcgtcttcaagtcctgg
gcggtgacgcgcgggccttcgctcgatccgcatgacaagcggctggcggtggaggtcgag
gatcatccgctcgactatggcgatttcgaaggcaccattcccgaaggccagtatggcggc
ggcacggtgcaactgtgggatcgcggcacctgggaatcggacgatcccgagcgcggcttc
aagaagggcgacctgaagttcacgcttgagggcgacaagctgcacggcagctgggtactg
gtccggatgaagggcgaccgctttggcggcaagcgcaccaactggctcctgatcaagcac
cgcgacgaatatgccgttgacggcaacggcgaggaggtcctcgatgaggaccgttcggtc
gcttccggacgctcgatggcgcagatcgcggccggcaagggccgggcgcccaagccgttc
atgctggccaagggcaacggcaaggccaaggcggacgcggtctggcagtccaaccacggc
atggctgcggacgcgcgcgccaggaccaaggcgccggcgcccaaggagcggctgaaagtg
gcgcggcaggcgaaaccgaagcaggtatcggagatgcccgatttcgtcgcgccgcagctc
tgcgccgcggtggagtctccacccaatggcacgggctggtgccacgagatcaagttcgac
ggttaccgcgtgcagctccgcgtcgaagacggcgaggccgtgctgaagacgcgcaagggg
ctcgactggaccgccaagttcggcgcgatcgtgaaggaggcttcgaagctgccggacgcg
ctgatcgatggcgagatcgtcgcgctcgacaagaacggcacgccgcatttttcgacgctg
caggctgcgctctccgacggcaagacggatcggctgatcttctacgccttcgacctgctg
ttcgccggcaccgaggacctgcgcccgctgccgctcgccgagcgcaagacgcggctgaag
cagttgctcgcggcgcgcaagggcaagaacctcctgatccgctatgtcgagcatttcgag
cagcgcggcgaggcggtgctggattccgcacgcaagctcggtctcgaaggcatcgtctcc
aagcggctcgacggcgcctaccgttccggccgctccgacgactggaccaaggcaaaaatc
cgcgccggccatgaggtggtgctcggcggctggaagaccaccaatggcaaattccgctcg
ctgatggcgggcgtctatcgcggcgatcatctggcttttgtcggcatcgtcggcaccggc
ttcggccaggacacggtccgccgcatcatgccggcgctgaaggcggcggaggcggacaag
agcccgttcggcggcaaggacgcgccgaagaagacccgcgacgtgcactggctcaagccg
gagctggtcgccgagatcgagttcgccggctggaccgacgccggcaatatccgccaggcc
gccttcaagggcctgcgccaggacaagccggcgcacgaggtcgaggccgagcggccggtt
gtaaccaaagtggtgaagccgatggccaagggcgtggcgaagaagggcgccgggaaggcg
tccagcgaggtgatgggtgtcgtcatctcgcacccggacaaggcgctgtggcctgatgcg
ggcgatggcgaaccggtgaccaagctcgacctcgcgaactatttcgaggcggttggcgaa
tggatgatttcctatctcaagggccggccgtgctcgatcgtgcgtgcgcccgacggcatc
aagggcgagaccttcttccagcgccatgcgatggccggcacatcaaaattgctcaagctt
gcgaaggtctcgggcgaccgcaaaccctatttgcagatcgaccagatcgagggcctggcg
gcggtcgcgcagctcggcggcctcgaactgcatccctggaattgcgcgccggatgcctat
gacacgccgggccggctggtgttcgatctcgatcccgcgcccgatgtcgcgttcaccgac
gtgatcgacgccgccaaggatatgcggcaacggctgaccgcggtcggcctcgaaagcttc
tgcaagaccacgggcggcaaaggtctgcacgtcgtcacgccgctgctcgccggtgccagg
gacaaggtgacgtggaaggaggccaaggcgttcgcgcaggcggtctgccagtggatggcg
gaggacgatcccgagcgctatctgatcaacatgtccaaggccaagcgcacgggaaagatc
ttcctcgactatttgcgcaacgacaggatgtcgacggcggtcgcggtgttgtcgccgcgg
gcgcgtccgggggcgacggtgtcgatgccgctgacctggtcgcagctgcgcggtgatctc
gatccgaagaaattcacgctgcgcaccgtgccggccttgctcgcgaagacgaaggcctgg
gacggctacgaggacgcagcgtcgtcgatcaaatcggcgatgaagaagctcgcggcgcag
tag
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