Burkholderia pseudomallei 668: BURPS668_A3112
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Entry
BURPS668_A3112 CDS
T00481
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
bpd
Burkholderia pseudomallei 668
Pathway
bpd03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
bpd00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
BURPS668_A3112 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bpd03400
]
BURPS668_A3112 (ligD)
Enzymes [BR:
bpd01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
BURPS668_A3112 (ligD)
DNA repair and recombination proteins [BR:
bpd03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
BURPS668_A3112 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
ABN87546
LinkDB
All DBs
Position
II:complement(2950885..2954358)
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AA seq
1157 aa
AA seq
DB search
MAGKLSVYRSRRRFGETPEPEGARRSPRRTKGAGRAGDESKRRARGERVARRGRAQQPAP
ARRRSALHYVIQEHHARRLHYDFRLELDGTLKSWAIPKGPSLDPSVKRLAVHVEDHPLEY
AAFEGEIPEGHYGAGSVIVWDRGAWTPAGGIAAARAGYRAGKLSFTLDGDKLHGGWALVR
GRGLRDSGGKHEQWLLIKERDGDARDQADYDVLRARPGSVLGGARSGRARRGRAAEPTER
DAAAPKRARASVPKGRAEAKTSGRAPRTVSNGTAGAGKGASKRASKREGTNTGNGARSGK
GSGKGSGKGAGKGGATPRRKRAAAPQSFDVDSADTDSPAARGLALPAGLAARFGLSGAKR
AALPRTLRPQLATLVDAPPPGKDWLYEAKFDGYRVLIRIDRAAASRPIAVHTREGLDWSA
KFAAQLDALARLPVDRGWLDGEAVVLDRAGVPDFQALQNALGAGRSNDVTLFLFDVPFLN
GFDLRGVPLERRRALLAALVAAHASDVLRYSESLAFEAADLLTGACDAGLEGLIGKRRDG
RYVEGRSRSWIKLKCRRRQEFVIGGYTEPAGRRSGFGALLLGVYARAPGDEGDEGERRTR
GAAETRDERRRASHASHASRTSRTSRAPDAGAARAPQARPLALRYVGRVGTGFGERTLRA
LARTLREHETGRMPFADVPRERSGTPVHWVKPVLVAECEFAEWTGDGIVRQASFVGLRED
KPARTIVREQPQSMETEAMNEHADEHTDEHTDARAERRTGGRTRRKARDGGARDAPPLAR
HPKRGVAGSSTRKGARDGEAGKRAAAGSSPSSSPSSSTSPSISASGRTRGGGRSASRDRA
GDADEGANEGANDHAPRERAGAPKVAGVRVSHPGRVIDPHTGTRKLDLVEYWEWIAPWLL
PHLKGRPVSLVRAPADIGGELFFQKHADKLEIPNVALHAGLDPGHEALITIDDVKGLVGA
AQMGTIELHTWNAHVSNIEKPDRAVFDLDPDPSLDWRAVIEAAQLTRALLDELGLVSFCK
TSGGKGLHVVVPLARHAGWDDVKAFAHAVARHMAATLPERFTATMGPRNRKGKIFVDYLR
NNRGASTIAAYSVRARPGLGVSVPIAWDELPDTTGAAQWTLANLHERLDALKHDPWRAYA
HVRQRVTAALRKRLSDG
NT seq
3474 nt
NT seq
+upstream
nt +downstream
nt
atggcgggaaaactcagcgtgtaccgcagcaggcggcgcttcggcgaaacgccggagccc
gagggcgcgcggcggtcgccgcgccgcacgaaaggcgcgggccgcgcgggcgacgaatcg
aagcggcgcgcgcgcggcgagcgcgtcgctcgccgtggccgcgcgcagcagccggcgccg
gcgcgccgcaggtccgcgcttcattacgtgatccaggagcatcacgcgcgccgcttgcat
tacgactttcgtctcgaactcgatggcacgctcaaatcgtgggcgatcccgaaagggccg
agcctcgatccttcggtcaagcggctcgcggtgcacgtcgaggatcatccgctcgaatac
gcggcgttcgagggcgagattccggagggccattacggcgcgggctcggtgattgtctgg
gatcgcggcgcatggacgcccgccggtggcatcgccgccgcgcgcgccggctatcgcgcg
ggcaagctgagcttcacgctcgacggggacaagctgcacggcggctgggcgctcgtgcgc
ggccgcgggctgcgtgacagcggcggcaagcacgagcaatggctgctgatcaaggaacgc
gacggcgacgcgcgcgaccaagcggactacgacgtgctgcgcgcacggccgggcagcgtg
ctcggcggcgcgcggtccgggcgggcgaggcgcgggcgcgcggccgagccgacggagcgc
gacgccgccgcgccgaagcgggcgcgcgcttcagtgccgaaagggcgcgccgaagcgaag
acgagcgggcgtgcgccgcgcaccgtgtcgaacgggactgcgggcgcgggtaagggcgca
agcaagcgtgcaagcaagcgcgagggcacgaataccggaaacggcgcgagaagcggcaag
ggcagcggcaagggcagcggcaagggcgcgggcaagggcggggccacaccgcgccgcaaa
cgcgccgccgcgccgcagtcgttcgacgtcgattcggccgataccgattcacccgcggcg
cgcggcctcgcgttgcccgccgggcttgccgcgcgcttcggcctgagcggcgcgaagcgc
gcggcgctgccgcgcacgttgcggccgcaactggcgacgctcgtcgatgcgccgccgccc
ggcaaagactggctatacgaagcgaagttcgacggctaccgcgtgctgatccggatcgat
cgcgccgcggcgtcccgcccgattgccgtccacacgcgcgaggggctcgactggagcgcg
aaattcgccgcgcagctcgacgcgctcgcgcgcctgccggtcgaccggggctggctcgac
ggcgaggcggtcgtgctcgatcgcgcgggcgtgccggatttccaggcgctgcagaacgcg
ctcggcgccggacgctcgaacgatgtcacgctgttcctgttcgacgtgccgttcctgaac
ggcttcgacctgcgcggcgtgccgctcgaacggcggcgcgcgctgctcgccgcgctcgtc
gccgcgcatgcgagcgacgtgctgcgctactcggagagcctcgcgttcgaggccgccgat
ctgctgacgggcgcgtgcgacgcggggctcgaagggctgatcggcaagcggcgcgatggc
cggtacgtcgaggggcgctcgagatcgtggatcaagctgaagtgccggcgcaggcaggag
ttcgtgattggcggctacacggagccggccggacggcgcagcggattcggcgcgttgctg
ctcggcgtgtacgcccgggcgccgggcgacgagggcgacgagggcgaacgaaggacgcgc
ggcgcggccgaaacgcgcgacgagcggcgtcgtgcatcccacgcatcccacgcatcccgc
acatcccgcacatcccgcgcgcccgatgccggcgcggcgcgcgcaccgcaggcgcggccg
ctcgcgttgcgctacgtcggccgcgtcggcaccggcttcggcgagcgcacgcttcgcgcg
ctcgcgcggacgctgcgcgagcacgagaccggtcggatgccgttcgcggacgtgccgcgc
gagcgcagcggcacgccggttcactgggtgaagcccgtgctcgtcgccgaatgcgaattc
gcggaatggacgggcgacggcatcgtccggcaggcgtcgttcgtcgggctgcgcgaagac
aagccggcgcgcacgatcgttcgcgagcaaccgcaatccatggagacggaagccatgaat
gaacacgctgacgaacatacggatgaacataccgatgcacgcgccgaacgtcgcaccggc
ggacgcacgcggcgcaaagcacgtgacggcggcgcgcgcgacgcgccgccgcttgcccgc
catccgaagcgcggcgttgcgggatcgtccacgcgcaagggcgcgcgggacggggaggcg
ggcaagcgcgccgccgcgggatcgtcgccttcgtcttcaccgtcgagttcgacttcgcct
tcgatttcggcgtcagggcgcacgcgcgggggcggtcgttccgcctcgcgcgatcgagcc
ggcgatgcggacgaaggtgcgaacgaaggcgcgaacgatcacgcgccgcgcgagcgcgcc
ggcgcgccgaaggtggcgggcgtgcgcgtctcgcatcccggccgcgtgatcgatccgcac
acgggcacgcgcaagctcgacctcgtcgaatactgggaatggatcgcgccgtggttgctg
ccgcatctgaagggccggccggtgtcgctcgtgcgcgcgcccgccgacatcggcggcgag
ctgttcttccagaagcacgcggacaagctggagattccgaacgtcgcgctgcacgcgggg
ctcgacccgggccatgaggcgctcatcacgatcgacgatgtgaaggggctcgtcggcgcc
gcgcaaatgggcacgatcgagctgcacacatggaacgcgcacgtgtcgaacatcgagaag
ccggaccgcgcggtgttcgacctcgacccggacccgtcgctcgactggcgcgcggtgatc
gaggctgcgcagctcacgcgcgcgctgctggacgagctcggcctcgtgtcgttctgcaag
acgagcggcggcaaggggctgcacgtcgtcgtgccgctcgcgcgccatgcgggctgggac
gacgtgaaggcgttcgcgcacgcggtggcgcggcacatggcggcgaccctgcccgagcgc
ttcaccgcgacgatggggccgcgcaaccggaagggcaagatcttcgtcgactatctgcgc
aacaaccgcggcgcgagcacgatcgccgcgtactcggtgcgcgcgaggccggggcttggc
gtatcggtgccgatcgcatgggacgaactgccggatacgacgggcgccgcgcaatggacg
ctcgcgaacctgcacgagcgtctcgacgcgctgaagcacgacccgtggcgcgcctatgcg
catgtgcggcaacgcgtgacggcggcgttgcggaagcggctgagcgatgggtag
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