KEGG   Burkholderia pseudomallei 668: BURPS668_A3112
Entry
BURPS668_A3112    CDS       T00481                                 
Symbol
ligD
Name
(GenBank) DNA ligase D
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
bpd  Burkholderia pseudomallei 668
Pathway
bpd03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:bpd00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    BURPS668_A3112 (ligD)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:bpd03400]
    BURPS668_A3112 (ligD)
Enzymes [BR:bpd01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     BURPS668_A3112 (ligD)
DNA repair and recombination proteins [BR:bpd03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     BURPS668_A3112 (ligD)
SSDB
Motif
Pfam: LigD_Prim-Pol LigD_N DNA_ligase_A_C DNA_ligase_A_M DNA_primase_S
Other DBs
NCBI-ProteinID: ABN87546
LinkDB
Position
II:complement(2950885..2954358)
AA seq 1157 aa
MAGKLSVYRSRRRFGETPEPEGARRSPRRTKGAGRAGDESKRRARGERVARRGRAQQPAP
ARRRSALHYVIQEHHARRLHYDFRLELDGTLKSWAIPKGPSLDPSVKRLAVHVEDHPLEY
AAFEGEIPEGHYGAGSVIVWDRGAWTPAGGIAAARAGYRAGKLSFTLDGDKLHGGWALVR
GRGLRDSGGKHEQWLLIKERDGDARDQADYDVLRARPGSVLGGARSGRARRGRAAEPTER
DAAAPKRARASVPKGRAEAKTSGRAPRTVSNGTAGAGKGASKRASKREGTNTGNGARSGK
GSGKGSGKGAGKGGATPRRKRAAAPQSFDVDSADTDSPAARGLALPAGLAARFGLSGAKR
AALPRTLRPQLATLVDAPPPGKDWLYEAKFDGYRVLIRIDRAAASRPIAVHTREGLDWSA
KFAAQLDALARLPVDRGWLDGEAVVLDRAGVPDFQALQNALGAGRSNDVTLFLFDVPFLN
GFDLRGVPLERRRALLAALVAAHASDVLRYSESLAFEAADLLTGACDAGLEGLIGKRRDG
RYVEGRSRSWIKLKCRRRQEFVIGGYTEPAGRRSGFGALLLGVYARAPGDEGDEGERRTR
GAAETRDERRRASHASHASRTSRTSRAPDAGAARAPQARPLALRYVGRVGTGFGERTLRA
LARTLREHETGRMPFADVPRERSGTPVHWVKPVLVAECEFAEWTGDGIVRQASFVGLRED
KPARTIVREQPQSMETEAMNEHADEHTDEHTDARAERRTGGRTRRKARDGGARDAPPLAR
HPKRGVAGSSTRKGARDGEAGKRAAAGSSPSSSPSSSTSPSISASGRTRGGGRSASRDRA
GDADEGANEGANDHAPRERAGAPKVAGVRVSHPGRVIDPHTGTRKLDLVEYWEWIAPWLL
PHLKGRPVSLVRAPADIGGELFFQKHADKLEIPNVALHAGLDPGHEALITIDDVKGLVGA
AQMGTIELHTWNAHVSNIEKPDRAVFDLDPDPSLDWRAVIEAAQLTRALLDELGLVSFCK
TSGGKGLHVVVPLARHAGWDDVKAFAHAVARHMAATLPERFTATMGPRNRKGKIFVDYLR
NNRGASTIAAYSVRARPGLGVSVPIAWDELPDTTGAAQWTLANLHERLDALKHDPWRAYA
HVRQRVTAALRKRLSDG
NT seq 3474 nt   +upstreamnt  +downstreamnt
atggcgggaaaactcagcgtgtaccgcagcaggcggcgcttcggcgaaacgccggagccc
gagggcgcgcggcggtcgccgcgccgcacgaaaggcgcgggccgcgcgggcgacgaatcg
aagcggcgcgcgcgcggcgagcgcgtcgctcgccgtggccgcgcgcagcagccggcgccg
gcgcgccgcaggtccgcgcttcattacgtgatccaggagcatcacgcgcgccgcttgcat
tacgactttcgtctcgaactcgatggcacgctcaaatcgtgggcgatcccgaaagggccg
agcctcgatccttcggtcaagcggctcgcggtgcacgtcgaggatcatccgctcgaatac
gcggcgttcgagggcgagattccggagggccattacggcgcgggctcggtgattgtctgg
gatcgcggcgcatggacgcccgccggtggcatcgccgccgcgcgcgccggctatcgcgcg
ggcaagctgagcttcacgctcgacggggacaagctgcacggcggctgggcgctcgtgcgc
ggccgcgggctgcgtgacagcggcggcaagcacgagcaatggctgctgatcaaggaacgc
gacggcgacgcgcgcgaccaagcggactacgacgtgctgcgcgcacggccgggcagcgtg
ctcggcggcgcgcggtccgggcgggcgaggcgcgggcgcgcggccgagccgacggagcgc
gacgccgccgcgccgaagcgggcgcgcgcttcagtgccgaaagggcgcgccgaagcgaag
acgagcgggcgtgcgccgcgcaccgtgtcgaacgggactgcgggcgcgggtaagggcgca
agcaagcgtgcaagcaagcgcgagggcacgaataccggaaacggcgcgagaagcggcaag
ggcagcggcaagggcagcggcaagggcgcgggcaagggcggggccacaccgcgccgcaaa
cgcgccgccgcgccgcagtcgttcgacgtcgattcggccgataccgattcacccgcggcg
cgcggcctcgcgttgcccgccgggcttgccgcgcgcttcggcctgagcggcgcgaagcgc
gcggcgctgccgcgcacgttgcggccgcaactggcgacgctcgtcgatgcgccgccgccc
ggcaaagactggctatacgaagcgaagttcgacggctaccgcgtgctgatccggatcgat
cgcgccgcggcgtcccgcccgattgccgtccacacgcgcgaggggctcgactggagcgcg
aaattcgccgcgcagctcgacgcgctcgcgcgcctgccggtcgaccggggctggctcgac
ggcgaggcggtcgtgctcgatcgcgcgggcgtgccggatttccaggcgctgcagaacgcg
ctcggcgccggacgctcgaacgatgtcacgctgttcctgttcgacgtgccgttcctgaac
ggcttcgacctgcgcggcgtgccgctcgaacggcggcgcgcgctgctcgccgcgctcgtc
gccgcgcatgcgagcgacgtgctgcgctactcggagagcctcgcgttcgaggccgccgat
ctgctgacgggcgcgtgcgacgcggggctcgaagggctgatcggcaagcggcgcgatggc
cggtacgtcgaggggcgctcgagatcgtggatcaagctgaagtgccggcgcaggcaggag
ttcgtgattggcggctacacggagccggccggacggcgcagcggattcggcgcgttgctg
ctcggcgtgtacgcccgggcgccgggcgacgagggcgacgagggcgaacgaaggacgcgc
ggcgcggccgaaacgcgcgacgagcggcgtcgtgcatcccacgcatcccacgcatcccgc
acatcccgcacatcccgcgcgcccgatgccggcgcggcgcgcgcaccgcaggcgcggccg
ctcgcgttgcgctacgtcggccgcgtcggcaccggcttcggcgagcgcacgcttcgcgcg
ctcgcgcggacgctgcgcgagcacgagaccggtcggatgccgttcgcggacgtgccgcgc
gagcgcagcggcacgccggttcactgggtgaagcccgtgctcgtcgccgaatgcgaattc
gcggaatggacgggcgacggcatcgtccggcaggcgtcgttcgtcgggctgcgcgaagac
aagccggcgcgcacgatcgttcgcgagcaaccgcaatccatggagacggaagccatgaat
gaacacgctgacgaacatacggatgaacataccgatgcacgcgccgaacgtcgcaccggc
ggacgcacgcggcgcaaagcacgtgacggcggcgcgcgcgacgcgccgccgcttgcccgc
catccgaagcgcggcgttgcgggatcgtccacgcgcaagggcgcgcgggacggggaggcg
ggcaagcgcgccgccgcgggatcgtcgccttcgtcttcaccgtcgagttcgacttcgcct
tcgatttcggcgtcagggcgcacgcgcgggggcggtcgttccgcctcgcgcgatcgagcc
ggcgatgcggacgaaggtgcgaacgaaggcgcgaacgatcacgcgccgcgcgagcgcgcc
ggcgcgccgaaggtggcgggcgtgcgcgtctcgcatcccggccgcgtgatcgatccgcac
acgggcacgcgcaagctcgacctcgtcgaatactgggaatggatcgcgccgtggttgctg
ccgcatctgaagggccggccggtgtcgctcgtgcgcgcgcccgccgacatcggcggcgag
ctgttcttccagaagcacgcggacaagctggagattccgaacgtcgcgctgcacgcgggg
ctcgacccgggccatgaggcgctcatcacgatcgacgatgtgaaggggctcgtcggcgcc
gcgcaaatgggcacgatcgagctgcacacatggaacgcgcacgtgtcgaacatcgagaag
ccggaccgcgcggtgttcgacctcgacccggacccgtcgctcgactggcgcgcggtgatc
gaggctgcgcagctcacgcgcgcgctgctggacgagctcggcctcgtgtcgttctgcaag
acgagcggcggcaaggggctgcacgtcgtcgtgccgctcgcgcgccatgcgggctgggac
gacgtgaaggcgttcgcgcacgcggtggcgcggcacatggcggcgaccctgcccgagcgc
ttcaccgcgacgatggggccgcgcaaccggaagggcaagatcttcgtcgactatctgcgc
aacaaccgcggcgcgagcacgatcgccgcgtactcggtgcgcgcgaggccggggcttggc
gtatcggtgccgatcgcatgggacgaactgccggatacgacgggcgccgcgcaatggacg
ctcgcgaacctgcacgagcgtctcgacgcgctgaagcacgacccgtggcgcgcctatgcg
catgtgcggcaacgcgtgacggcggcgttgcggaagcggctgagcgatgggtag

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