Bordetella pertussis Tohama I: BP3560
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Entry
BP3560 CDS
T00139
Symbol
ligA
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
bpe
Bordetella pertussis Tohama I
Pathway
bpe03030
DNA replication
bpe03410
Base excision repair
bpe03420
Nucleotide excision repair
bpe03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
bpe00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
BP3560 (ligA)
03410 Base excision repair
BP3560 (ligA)
03420 Nucleotide excision repair
BP3560 (ligA)
03430 Mismatch repair
BP3560 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
bpe03032
]
BP3560 (ligA)
03400 DNA repair and recombination proteins [BR:
bpe03400
]
BP3560 (ligA)
Enzymes [BR:
bpe01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
BP3560 (ligA)
DNA replication proteins [BR:
bpe03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
BP3560 (ligA)
DNA repair and recombination proteins [BR:
bpe03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
BP3560 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
BP3560 (ligA)
MMR (mismatch excision repair)
DNA ligase
BP3560 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
BP3560 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
PTCB-BRCT
HHH
BRCT_2
Motif
Other DBs
NCBI-ProteinID:
CAE43819
UniProt:
Q7VRX7
LinkDB
All DBs
Position
3774473..3776563
Genome browser
AA seq
696 aa
AA seq
DB search
MAQAGPTPQQAIARLRAEIEQHNIRYYVHDDPSVPDAEYDALMRDLQALEAEHPELVTPD
SPTQRVGAAPLAEFGSVRHAVPMLSLGNAFDEEDVRAFDKRVADTLRGAGLLGLDQQVEY
FCELKLDGLAISLRYEEGRLAQAATRGDGQTGEDVTANIRTIKGVPLRLHGAPRVLEVRG
EVLMNRAEFERLNRTQAARGEKVFVNPRNAAAGSLRQLDPRITAQRPLRFFAYSWGEVHG
LPEGMPTRFDEPAPGVRVASTLPRDTHGGMLDWLAELGLPVNLRHNHRERGADGLLAFYE
RIGKLRADLPYDIDGVVYKVDALPSQRVLGFVARAPRFALAHKFPAEEAVTQLLGIEVQV
GRTGAITPVARLAPVFVGGVTVTNATLHNEDEIRRKDVRIGDTVIVRRAGDVIPEVVGPV
LEKRPADAREFVMLTACPICGSAIERPESEAIARCTGGLFCAAQRKQTLLHAAGRKALDI
EGLGEKLIDQLVDADRVKSLADIYSLTAFELAALERMGKKSAENLVAAIDQARRPALGRL
LFALGIRHVGETTARDVARHFGSMERIMDASEEALLAVPDVGGVVAGSIRRFFAEPHNRE
IVEQLTQQGVHPQAEAEPEGTSLAGKTFVLTGTMPNWTRDEATRRILAAGGKVSGSVSKK
TAYLVTGEDAGSKLTKAQELGVPVLDEDGLKALLGL
NT seq
2091 nt
NT seq
+upstream
nt +downstream
nt
atggcgcaggcaggtcctacgccgcagcaagcgatcgcgcgcctgcgggccgagatcgag
cagcacaatatccgttattacgtccacgacgatcccagcgttccggacgccgagtacgac
gcgctcatgcgcgacctgcaagcgctggaggccgaacaccccgagctggtcacgcccgat
tcgccgacgcagcgcgtgggcgccgcgccgctggccgaattcggcagcgtgcgccacgcc
gtgcccatgctgtcgctgggcaatgctttcgacgaagaggacgtgcgcgccttcgacaag
cgcgtggccgataccctgcgcggcgcgggcctgctgggcctggaccagcaggttgaatac
ttctgtgagctcaagctggacggcctggccatcagcctgcgctacgaggagggcaggctg
gcccaggcggccacgcgcggcgacgggcagaccggcgaggacgtcacggccaacatccgc
accatcaaaggcgtgccgttgcgcctgcatggcgcgccgcgggtactcgaggtgcgcggc
gaagtcctgatgaaccgtgccgagttcgaacgcctgaaccgtacgcaggcagcgcgcggc
gagaaagtgttcgtcaacccgcgcaatgccgcggccggcagcctgcgccagctcgatccg
cgcatcacggcgcagcggccgttgcgtttcttcgcctatagctggggcgaagtccatggc
ctgcccgaaggcatgccgacgcgctttgacgagcccgcgccgggcgtgcgcgtggcgtcc
acgctgccgcgcgacacgcatggcggcatgctggactggctggccgaactgggcctgccg
gtcaatctgcggcacaaccaccgagagcgcggcgccgacgggctgctggccttttacgag
cgtatcggcaagctgcgcgccgatctgccctacgacatcgacggcgtggtctacaaggtc
gacgccttgccgtcgcagcgcgtgctgggcttcgtcgcgcgcgcgccgcgctttgcgctg
gcgcacaagtttccggccgaggaggccgtcacgcaactgctcggcatcgaggtccaggtg
ggccgcacgggcgcgatcacgcccgtggcgcgcctggcgccggtgttcgtcggcggggtg
acggtcaccaacgccaccctgcacaacgaagacgagatccgccgcaaggatgtgcgcatc
ggcgataccgtgatcgtgcggcgcgccggcgacgtcattcccgaggtggtcgggccggtg
ctggaaaaacggccggccgacgcgcgcgagttcgtcatgctgaccgcctgccccatctgc
ggctcggcgatcgagcgccccgagagcgaggccatcgcccgctgcacgggcgggctgttc
tgcgccgcccagcgcaagcagaccctgctgcatgccgccggccgcaaggcgctggatatc
gaaggcctgggcgaaaagctgatcgaccaactggtcgacgccgatcgcgtcaagtcgctg
gccgatatctacagcctgaccgcgttcgaactggcggcgctcgaacgcatgggcaagaaa
tcggcggaaaacctggtggcggccatcgaccaggcgcgccgtccggctctgggccgcttg
ctgttcgcgctgggcatacgccatgtgggcgagacgacggcccgcgacgtggcgcgccat
ttcggcagcatggaacgcatcatggacgccagcgaagaagcgctgctggccgtgcccgac
gtgggcggcgtggtggccggctcgatccggcgcttcttcgccgagccgcacaatcgcgag
atcgtcgagcagctcacgcagcagggcgtgcacccgcaagccgaggccgagcccgagggc
accagcctggccggcaagaccttcgtcctgaccggcaccatgccgaactggacccgcgat
gaggcgactcgccgtatcctggccgccggcgggaaggtcagcggttcggtctccaagaag
acggcctacctggtgacgggcgaggatgccggcagcaagctgaccaaggcccaggagctt
ggcgttccggtgttggacgaggacggcctgaaggcgctgctgggcctgtag
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