Boleophthalmus pectinirostris (great blue-spotted mudskipper): 110165995
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Entry
110165995 CDS
T05002
Symbol
lig4
Name
(RefSeq) DNA ligase 4
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
bpec
Boleophthalmus pectinirostris (great blue-spotted mudskipper)
Pathway
bpec03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
bpec00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
110165995 (lig4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bpec03400
]
110165995 (lig4)
Enzymes [BR:
bpec01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
110165995 (lig4)
DNA repair and recombination proteins [BR:
bpec03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
110165995 (lig4)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
BRCT
DNA_ligase_A_C
DNA_ligase_IV
BRCT_2
RNA_ligase
mRNA_cap_enzyme
Motif
Other DBs
NCBI-GeneID:
110165995
NCBI-ProteinID:
XP_020786852
LinkDB
All DBs
Position
Unknown
AA seq
921 aa
AA seq
DB search
MEGSSNNVASTSSSSSSSSSSSASPSVAAQVPFLHLCNTLERIQKAKTRPEKSKILGDFM
ETWRKFHSVLHKENPKTTDSFYPAMRLIVPAFERERMAYGIKENMLAKLYIDVLGLPKNG
PEANKLLNYRAPTSTQGEAGDFAGMAFFVLKKRCTGDGKLTIKEVNDFLDSVAINNANKK
KDLVRQSLLHLITQSSALEQKWLIRMIIKDMKISISKETVLQVFHSDAPELYNVNTDLKK
VCLQLHDPAVSLSEVSIGLFSAFKPMLAAVANLRNIEKQMSNSPFYIETKLDGERIQLHK
DGDVYKYFSRNAFEYTQQFGGSPLEGSLTPYIHNVFKSDVVNCILDGEMMAYNPTAETFM
QKGSKFDIKKLMEDSELQTCFCVFDVLLVNDRKLGKETLKKRYEILQTVFTPVKGRIHIV
PKTEVKSTKEVINALNDAIDGREEGIMVKDPMSIYKPDKRGEGWLKIKPEYVDGLMDELD
LLIVGGYWGKGRRGGMMSHFLCAVAEAPKPGETKPSVFHTLCRIGSGYTMKELYDLGLKL
AKHWKVYKKNDPPASILCATEKPEVYIEPCNSVIIQVKAAEIVSSDMYKTNCTLRFPRIE
KIRDDKEWHQCTTLAELDQFRSKASGKLASRHLSLEDGAPQKKKRKVPVKPKKVVGVVEH
FKPQDLSGVQKETDMFEDVEFCVINGTEEHDKAALERGVASCGGIVVQNPGPDTYCVLVG
AENMRVKNLVASNKHDVVRAAWLLECLERKEMVPWQPRHMISMTPSTREYFAKKYDRYGD
SYDVDTDAEQLREVFDRITSVDVEVEAARVEQRYGWEDLPTSMFRPFAAYMDRFEDIGES
RVPRAGSVLDVRALEFELHGGRVERRLEEGVTHVVVQDEGSVLELRTLRRTFRRKFKIVR
DSWVTDSISAGFVLDDHDYLV
NT seq
2766 nt
NT seq
+upstream
nt +downstream
nt
atggagggttcgtccaataacgtcgcatctacctcctcctcttcctcctcgtcttcctct
tcttcggcctcgccctctgtcgccgctcaggtcccgttccttcacctctgcaacactttg
gagcgaatccaaaaggccaaaacgcgcccggaaaaatccaaaatcctgggagacttcatg
gaaacctggcgaaagttccactcggttttacacaaagaaaatcccaaaaccacagactcg
ttttacccggcaatgcgtcttatcgtgccggcgttcgaacgggagcgcatggcgtacggc
atcaaggaaaacatgctcgcgaaactgtacatcgacgtcctggggctgccgaaaaacggg
cctgaagcgaataaacttttaaattaccgcgcgccgacttctacgcaaggagaggccggc
gatttcgctggaatggccttctttgttttgaaaaagcgctgcactggtgatggcaaactt
accataaaagaagtcaacgattttctagattctgtggcgattaacaacgcaaacaagaag
aaggacttggtcaggcaaagtttgctgcatctcatcacgcagagttcggcgttggagcaa
aaatggttgatccgaatgattataaaagacatgaagattagtatcagtaaagaaacggtg
ctgcaggttttccactcggacgcgccagagctttacaacgtcaacacggacttgaagaaa
gtttgtctgcagctccacgaccccgcagtgtcgctgagtgaagtctcgatcggattattc
tccgcgttcaaaccgatgctcgccgccgtcgccaacctccgcaacatcgaaaagcaaatg
agcaacagccctttttacatcgagaccaaactcgacggcgagcgcatccagctgcacaaa
gacggcgacgtttacaagtacttcagccgcaacgccttcgagtacacgcagcagttcggg
ggctcgccgctcgagggctccctcacgccgtacatccacaacgttttcaaaagcgacgtc
gtgaactgcattttggacggggagatgatggcgtacaacccgaccgccgagacgttcatg
caaaagggaagcaagttcgacatcaagaagttaatggaggactccgagctgcagacgtgc
ttttgcgtgttcgacgttttgctggtgaacgatcggaaactggggaaggagacgttgaaa
aagcgatacgagattctgcagaccgtcttcacgccggttaaagggcgcattcacatcgtg
cccaaaaccgaagtgaaaagcaccaaagaggttataaacgctttgaacgacgcgatagac
ggacgcgaggaagggatcatggtcaaagatccgatgtccatctacaaaccagataaacgc
ggcgagggctggctcaaaatcaaacccgagtacgtcgacggtttgatggacgagctcgac
ttgcttatagtcggcggttattggggaaaaggcagacggggcggaatgatgtcgcacttt
ctctgcgctgtagccgaagcaccaaaaccgggagaaacgaaaccttcagttttccacacg
ctttgccgaatcggatcgggctacaccatgaaagagctttacgatctgggtttgaaactg
gcaaaacactggaaagtttacaagaaaaacgatccgccggcgtccattctgtgcgcgacg
gaaaagccggaggtttacatcgaaccgtgcaactccgtgatcatccaagtcaaagcggca
gagatcgtgagcagcgacatgtacaagacgaactgcacgctgcgctttccccggatcgag
aaaatccgagacgacaaagagtggcaccagtgcacgacgctggccgagctggatcagttc
cggagcaaagcgtcggggaagctggcgtcgcggcacctgagcctggaggacggagcgcca
cagaagaagaagaggaaggtcccggtgaagcccaagaaggtggtgggggtcgtggagcac
ttcaaaccacaggacctgagcggcgtccagaaggagacggacatgttcgaggacgtggag
ttctgcgtcatcaacggcacagaggagcatgacaaagcggcgctggagcggggcgtggcc
agttgcggcggtatcgtggtgcagaatccgggtccggacacgtactgcgtcctggtcggc
gccgagaacatgcgcgtgaagaacctcgtcgcctccaacaaacacgacgtggtgcgggcg
gcgtggctcctcgagtgcctggagcggaaggagatggtgccgtggcagccgcgtcacatg
atcagcatgacgccctccacccgggagtacttcgccaaaaagtacgaccggtacggcgac
agctacgacgtggacacggacgcggagcagctgcgggaggtgttcgacaggatcacgtcg
gtggatgtggaggtggaggcggcgcgggtggagcagcggtacggctgggaggacctgccc
acgagcatgttccgacccttcgccgcgtacatggatcgtttcgaggacatcggggagtcg
cgcgtgccgagggcggggagcgtgctggacgttcgggcgctggagttcgagctccacggg
gggcgggtggagcggcggctggaggagggggtgactcacgtggtggtgcaggacgagggc
tcggttctggagctcaggactttgcgcagaaccttcaggaggaagttcaagatcgtgaga
gactcgtgggtcacggactcgatcagcgccgggtttgtgctcgacgatcacgactacctc
gtttaa
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