Boleophthalmus pectinirostris (great blue-spotted mudskipper): 110175118
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Entry
110175118 CDS
T05002
Symbol
lig1
Name
(RefSeq) DNA ligase 1
KO
K10747
DNA ligase 1 [EC:
6.5.1.1
6.5.1.6
6.5.1.7
]
Organism
bpec
Boleophthalmus pectinirostris (great blue-spotted mudskipper)
Pathway
bpec03030
DNA replication
bpec03410
Base excision repair
bpec03420
Nucleotide excision repair
bpec03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
bpec00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
110175118 (lig1)
03410 Base excision repair
110175118 (lig1)
03420 Nucleotide excision repair
110175118 (lig1)
03430 Mismatch repair
110175118 (lig1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
bpec03032
]
110175118 (lig1)
03400 DNA repair and recombination proteins [BR:
bpec03400
]
110175118 (lig1)
Enzymes [BR:
bpec01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
110175118 (lig1)
6.5.1.6 DNA ligase (ATP or NAD+)
110175118 (lig1)
6.5.1.7 DNA ligase (ATP, ADP or GTP)
110175118 (lig1)
DNA replication proteins [BR:
bpec03032
]
Eukaryotic type
DNA Replication Elongation Factors
Other elongation factors
110175118 (lig1)
Prokaryotic type
Elongation factors (archaeal)
Other elongation factors
110175118 (lig1)
DNA repair and recombination proteins [BR:
bpec03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Long Patch-BER factors
110175118 (lig1)
NER (nucleotide excision repair)
Other NER factors
110175118 (lig1)
MMR (mismatch excision repair)
Other MMR factors
110175118 (lig1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DNA_ligase_A_C
Motif
Other DBs
NCBI-GeneID:
110175118
NCBI-ProteinID:
XP_020796891
LinkDB
All DBs
Position
Unknown
AA seq
1003 aa
AA seq
DB search
MQRSIASFFQAKTKEKKSGDEPVKKPVKSPLKVHNGAHEADSPVKKPPKRSRQILDSDED
EAPENQTTAVKEREKKEKSGEKKIEKEEEKKAEKDEVLKAPTPKSPPPTPSTPRTPATPA
TPAPVSTPVSTPATAPATPALSASSGTPCTPDSISPSGIVKRKTARKMFPKRKLNESGSE
SREKEDSEEKDGAGHQNKRARVESEASTAGSADEPMEEETKQESTEKAVTAKSTAANELL
QSEKAKEEPIQEASTKTDKIYDDEKPTTVTTATKIEKKMPEKDEESSKSQAENTQGDKEP
AKKPAISSFFAPRKAAAVTVKTEKVERGEEKKTERKSLGEESKSEVTSGQTDYNPSRPNY
HPINDACWKHGQKVPYLAVARTFERIEEDSGRLRNIETLSNFFRSVLLLSPDDLLCCVYL
CLNQLGPAYLGMELGVGETVLMKAVAQTTGRQLDKIKAEAQEKGDLGLVAESSRSNQRMM
FQPASLTATAVFKKLKEIAAMSGNSAMNKKIDIIKGLFVACRFSEARYIVRSLAGKLRIG
LAELSVLSALSQAVCLTPPGQDFPPAVIDAGKGMSSDSKRSWIEEKTLILKQTYCEMPNY
DVLIPVLLKEGIEELPKHCKLTPGVPLRPMLAHPTKGVGEVMKKFDEAAFTCEYKYDGER
AQIHILENGDVRIFSRNQEDNTTKYPDIISRIPKVKKESVVSCVLDSEAVAWDREKKQIQ
PFQVLTTRKRKDVDASEIKVQVCVYAFDLLYLNGESLVKQPLSRRRALLHESFSEVEGEF
VFAKSIDSDNTDTIAEFLEQSVKDSCEGLMVKTLEKDATYEIAKRSHNWLKLKKDYLDGV
GDTVDLCVIGAYLGKGKRTGTYGGFLLACYDEENEEFQSVCKIGTGFKDEDLEQHYKFLK
EHILPKPRAYFRFDPSAEPDVWLDAVQVWEVKCADLSLSPVYKAGLGLVDPEKGISLRFP
RFLRIRDDKKPEDATTGSQIADLYRKQQQIQNQGEKADPEDYY
NT seq
3012 nt
NT seq
+upstream
nt +downstream
nt
atgcagcggagtattgcgtccttttttcaggccaaaactaaagaaaagaaatctggagat
gaacctgtgaaaaagccggtgaagagtcccctgaaggtgcacaacggggctcatgaggca
gattctccggtgaaaaaacctcccaaacggagccgtcagattctggacagtgacgaagac
gaggccccggaaaaccagaccactgctgtcaaagagagagagaagaaggagaagagcgga
gagaagaagatagagaaagaggaggagaagaaggctgagaaggatgaagttttgaaagcc
ccaacccccaagtctcctcctccgacccccagcacccccaggacacctgccacccctgcc
acacctgcacctgtctctacaccagtctctacacctgccactgcacctgctaccccggcc
ctgtccgcctcctctgggactccctgcaccccagactccatctctccatccgggattgtc
aaacgcaaaactgcgaggaagatgttccccaagaggaagctgaacgagagcgggagcgag
agccgagaaaaagaggattccgaggagaaggacggagcaggtcatcaaaacaaacgcgcc
cgagtggagagcgaagctagcacagcaggtagcgctgatgagccaatggaagaggagacc
aagcaggagagcactgaaaaggctgttaccgccaaatccactgctgcaaatgagctgctc
cagtctgaaaaggccaaagaggaacccatccaagaagcatctacaaaaacagacaagatt
tatgatgatgagaaaccaaccactgtcaccacggcgacaaaaattgagaaaaaaatgcct
gaaaaggacgaagaaagctccaaaagtcaagccgagaatacacaaggagataaggagccc
gccaagaaaccggcaatcagcagtttctttgctccaagaaaagcagcagcagtgacggtg
aaaactgagaaagtagagcgaggtgaagaaaagaagacagagagaaagagtttgggagag
gagagtaaaagtgaggtaacatcaggacagaccgactacaatccttccagaccaaactat
caccccatcaacgacgcctgctggaagcacggacaaaaggtgccgtatctggctgtggcg
cgcacctttgagagaattgaagaggattccggcaggctcagaaacatcgagactctgtcc
aatttcttccgctcggtgctgctgctgtctccagatgacctgctgtgctgtgtgtacctg
tgcttaaaccagctgggccccgcctacctggggatggagctgggagtgggagagaccgtg
ctcatgaaggccgtggcccagacaacaggtcgtcagttggataaaatcaaagcggaggct
caggagaagggggacctaggactggttgctgagagctctcggagtaatcaaaggatgatg
ttccagccggcgagcctgaccgccaccgctgtgttcaagaaactgaaggagatcgcagcc
atgagtggaaactcggccatgaataagaaaatcgacatcatcaaagggcttttcgtggcc
tgtcgtttttctgaagcgcgctacatcgtcaggtcgctggctgggaaactaagaataggc
ctggcggagctgagcgtcctgtctgcattaagccaagctgtgtgtctgaccccacctgga
caagatttcccccctgctgtgatcgacgctggcaaaggcatgagctcagacagcaaacgc
tcctggatcgaagaaaaaactctcatcctcaaacagacctactgtgaaatgcccaattac
gacgtgctgattccggttctgctgaaagagggcatcgaagagctccccaaacactgcaaa
ctcactccaggagtccctctcaggcccatgttggctcatccgaccaaaggagtgggagag
gtcatgaagaagtttgacgaggccgccttcacctgcgagtacaagtacgacggagagagg
gctcagattcacatcctggagaacggagacgtgcgcattttcagccgtaaccaagaagac
aacacgaccaagtacccagacatcatctctcgcatcccaaaggtgaagaaggagtctgtg
gtatcatgtgtgctggattccgaggctgtggcttgggacagagagaagaagcagatccag
ccatttcaggtgctcaccacaagaaagagaaaggatgtggatgcctctgaaatcaaagtc
caagtttgtgtttacgcatttgacctgctctacctgaacggagagtctttggtgaagcag
ccgctgtctcggcgacgggctctgctccatgagagtttttctgaagtggaaggagagttt
gttttcgccaagtccatcgactcggacaatactgacaccatcgcggagttcctggagcag
tctgtgaaagattcctgtgaaggtctgatggtgaagactctggagaaggatgcaacttat
gaaattgccaaaagatctcataactggctcaagttgaagaaggactacctggacggcgtt
ggagacactgtggacctgtgtgtgattggagcatatctggggaaagggaaaaggaccggg
acctacggcggcttcctattggcctgttacgacgaggagaacgaggagtttcagtctgtc
tgcaagatcgggacggggttcaaagacgaagacctggagcagcactacaagtttctgaag
gagcacatcttgccaaagccccgagcgtacttcaggtttgacccgtcggcggagcctgac
gtgtggctggacgcggtgcaggtctgggaggtcaaatgtgccgacctctcgctctctcca
gtttacaaggctggactcggactggtggatccagaaaagggaatttctttaagatttcct
cgtttccttcgaatcagagacgacaagaaacccgaggacgctaccaccgggtctcagatt
gcagatttgtacaggaagcagcagcagatccagaatcagggagagaaggcggacccggag
gattactactga
DBGET
integrated database retrieval system
