Bordetella pertussis B1917: B1917_3030
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Entry
B1917_3030 CDS
T03638
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
bpet
Bordetella pertussis B1917
Pathway
bpet03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
bpet00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
B1917_3030 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bpet03400
]
B1917_3030 (mfd)
Enzymes [BR:
bpet01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
B1917_3030 (mfd)
DNA repair and recombination proteins [BR:
bpet03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
B1917_3030 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
Helicase_C
UvrB_inter
CarD_TRCF_RID
MFD_D3
ResIII
Glyco_tran_WecG
SNF2-rel_dom
UB2H
AAA_30
ELP6
ERCC3_RAD25_C
Motif
Other DBs
NCBI-ProteinID:
AIW93282
LinkDB
All DBs
Position
complement(3228385..3231816)
Genome browser
AA seq
1143 aa
AA seq
DB search
MPIPATATTLSALKPGARFTQPRPPGSGDGWLLADLARQAGKPLVVLTADPLEAQRLADE
IPQFAPELRVRQLPDWETLPYDAFSPHQDLISQRLRTLHALMNQGVDILTVPVTTALYRL
APPAFLAAYTFSFKQKDRLDEAALRAQLTLANYSHVTQVTAPGEFCLRGGLIDLFPMGSV
VPYRLDLFDDEIESIRSFDVDTQRSLYPVGEVQLLPGREFPMDEEARNRFRARFREVFEG
DPSRALPYKDIGNGIAFAGIEYYLPLFFEQTATLFDYLAADTITVTVGDIDDAMQRFAHD
TRSRYDFLKVDRERPVLPPDTLFLDHEALFARLKDFPRLALMAERPHPDFAAAPDVAVAR
RADDPVARLRALLAQTGDRVLLCADSAGRRETLAQMLGEHGLAPEAQADSIQAFLDDGAR
FGLAVAPLSAGFCVPGGALLFLTENDLYPGHAGVTRRGKRTQERTSNVEAMVRDLAELRA
GDPVVHAQHGIGRYHGLVNMDMGEGEMEFLHLEYASGSTLYVPVSQLHVIARYSGADPDA
APLHQLGSGQWDKARRKAARQVRDTAAELLALYAQRAAREGYAFKLPMSDYEAFAEGFGF
EETPDQAAAIQAVIMDMTSGRPMDRLVCGDVGFGKTEVALRAAFLAVANGKQVALLCPTT
LLAEQHAQTFSDRFADWPVRVVELSRFRSAKEVAAAVEGINDGRVDIVIGTHKILSKDVR
FKRLGLVIIDEEHRFGVRQKETLKALRAEVDVLTLTATPIPRTLGMSLEGIRDFSVIATA
PQKRLAIKTFVRREDGSTIREALLRELKRGGQVYFLHNEVETIHNRRARLEELVPEARIA
VAHGQMPERELEQVMKGFYQQRHNVLLCTTIIETGIDIPTANTIVIHRADRFGLAQLHQL
RGRVGRSHHQAYAYLLTPGEDAITNNAKKRLEAIQAMEELGSGFYLAMHDLEIRGTGEIL
GDSQSGNIQEVGFSMYNEMLNEAVRALKAGEEPDLDAPFNLACEVNLHAPALLPSDYCPD
VHGRLAIYKRLSHADGEDDLIRIQEELIDRFGKLPEAAQTLLATHRLRLAAQPLGIVKID
ASETQALLQFGAKTTVDPLRIIELVQRQRHIKLSGQDKLRVEIKAPQIAARADAVRAVLR
ALK
NT seq
3432 nt
NT seq
+upstream
nt +downstream
nt
gtgcccatccccgccaccgccaccaccctgtccgccctcaagccgggagcgcgctttacg
cagccccgcccgcccggatccggcgacggatggctgctggcggacctggcgcgccaggcc
ggcaagccgctggtggtgctgacggccgacccgctggaggcccagcggctggccgatgaa
atcccgcaattcgcgcccgaactgcgcgtgcgccagttgcccgactgggaaaccctgccc
tacgacgcgttctcgccccaccaggacctgatctcgcaacgcctgcgcacgctgcacgcg
ctcatgaaccagggcgtggacatcctgaccgtgccggtcaccaccgccctgtaccgcctg
gcgccgcccgccttcctggccgcgtatacgttttcgttcaagcagaaggaccggctcgac
gaagcggccctgcgcgcgcagctgacgctggccaactacagccacgttacccaggtcacc
gcgccgggcgaattctgcctgcgcggcggcctgatcgacctgtttcccatgggttcggtg
gtgccctaccggctggacctgttcgacgacgagatcgaatcgatccgcagcttcgacgtc
gacacgcagcgcagcctgtatccggtgggcgaagtgcagttgctgcccggccgcgagttt
cccatggacgaagaggcgcgcaaccgcttccgggcgcggtttcgcgaagtgttcgaaggc
gacccctcccgcgccctgccgtacaaggacatcggcaacggcatcgcgttcgccggcatc
gagtattacctgcccctgttcttcgagcagaccgccaccctgttcgattacctggcggcc
gacacgatcaccgtcacggtgggcgacatcgacgacgccatgcagcgcttcgcccatgac
acccgcagccgctacgactttctcaaggtcgaccgcgaacggccggtgctgccgccggac
accctgttcctcgaccacgaggcgctgttcgcgcgcctgaaagacttcccgcgcctggcc
ttgatggcggagcggccgcatccggacttcgccgccgcgcccgatgtcgccgtggcgcgc
cgcgccgacgaccccgtggcgcgcctgcgcgcgctgctggcgcagaccggcgaccgcgtg
ctgctgtgcgccgattcggccggccggcgcgagacgctggcgcaaatgctgggcgaacac
ggcctggcgcccgaggcgcaggccgattcgatccaggccttcctggacgacggcgcgcgc
ttcggcctggccgtggcgccgctgtcggccggcttctgcgttcccggcggcgccctgctg
ttcctgaccgagaacgacctctaccccggccatgccggcgtcacccggcgcggcaagcgc
acccaggaacgcaccagcaatgtcgaagccatggtgcgcgacctggccgaactgcgcgcc
ggcgacccggtggtgcacgcccagcacggcatcggccgctaccacgggctggtcaacatg
gacatgggcgaaggcgagatggagttcctgcatctcgaatacgccagcggcagcacgctg
tacgtgcccgtgtcgcagctgcacgtcatcgcccgctacagcggcgccgacccggacgcc
gcccccctgcaccagctcggttcgggccaatgggacaaggcgcgccgcaaggcggccagg
caggtgcgcgacaccgcggccgaactgctggccctgtatgcgcagcgcgccgcccgcgaa
ggctatgccttcaagctgcccatgagcgactacgaagccttcgccgaaggtttcggcttc
gaggagacgcccgaccaggcggccgccatccaggccgtcatcatggacatgacctcgggc
cgccccatggaccggctggtatgcggcgacgtgggcttcggcaagaccgaggtcgcgctg
cgcgccgccttcctggccgtggccaacggcaagcaggtcgcgctgctgtgccccaccacc
ctgctggccgagcagcatgcccagacgttttccgaccgcttcgccgactggccggtgcgc
gtcgtggagctgtcgcgctttcgctccgccaaggaggtggccgccgccgtcgaaggcatc
aacgacggccgcgtggacatcgtcatcggcacgcacaagatcctgtccaaggacgtgcgc
ttcaagcggctgggcctggtcatcatcgacgaggaacaccgctttggcgtgcgccagaag
gaaaccctcaaggcgctgcgcgccgaggtcgacgtgctgaccctgacggccaccccgatc
ccgcgcacgctgggcatgtcgctggaaggcatccgcgacttctccgtgatcgcgacggcg
ccgcagaagcggctggccatcaagaccttcgtgcggcgcgaggacggcagcaccatacgc
gaagcgctgctgcgcgagctcaagcgcggcggccaggtgtatttcctgcacaacgaggtc
gagaccatccacaaccggcgggcgcgcctcgaagaactggtgcccgaggcccgcatcgcg
gtcgcccacggccagatgcccgaacgcgagctggaacaggtcatgaagggcttctaccag
cagcgccacaacgtgctgctgtgcaccaccatcatcgaaaccggcatcgacatccccacc
gcaaacaccatcgtcatccaccgcgccgaccgcttcggcctggcgcagctgcaccagctg
cgcggccgcgtcggacgctcgcaccaccaggcctacgcctatctgctgacgccgggcgag
gatgccatcacgaacaacgccaagaagcgcctggaggccatccaggccatggaagagctc
ggttcgggcttctacctggccatgcacgacctggaaatccgcggcaccggcgaaatcctg
ggtgactcgcaatcgggcaacatccaagaggtgggcttctcgatgtacaacgagatgctc
aacgaagcggtgcgggcgctgaaggcgggcgaggagcccgacctggacgcgcccttcaac
ctggcctgcgaagtcaacctgcacgcgccggcgctgctgccgtcggactactgtcccgac
gtgcatggccgcctggccatctacaagcgcctgtcgcatgccgacggcgaagacgacctg
atccgcatccaggaagaactcatcgaccgtttcggtaaactgcccgaagccgcgcagacg
ttgctggccacgcaccgcctgcgcctggccgcgcaaccgctgggcatcgtcaagatcgat
gccagcgaaacgcaggccctgctgcagttcggtgccaagaccacggtcgaccccttgcgc
atcatcgagctggtgcagcgccagcgccatatcaagctgtccggccaggacaaactgcgg
gtggagatcaaggcgcctcagatcgccgcccgcgccgacgccgtgcgcgccgtcctgcgc
gcactgaaataa
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