Alkalihalophilus pseudofirmus: BpOF4_18445
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Entry
BpOF4_18445 CDS
T01165
Symbol
ligD
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
bpf
Alkalihalophilus pseudofirmus
Pathway
bpf03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
bpf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
BpOF4_18445 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bpf03400
]
BpOF4_18445 (ligD)
Enzymes [BR:
bpf01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
BpOF4_18445 (ligD)
DNA repair and recombination proteins [BR:
bpf03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
BpOF4_18445 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_ligase_A_M
DNA_ligase_A_C
Motif
Other DBs
NCBI-ProteinID:
ADC51730
UniProt:
D3FS95
LinkDB
All DBs
Position
2031734..2033470
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AA seq
578 aa
AA seq
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MVWENETPQLYSRNEKELTANFPEIIEWCRSNYEQVKEYLPLILDGELVHLTNSYQSEFT
LVQQRGKLRTIESITRHSRLYPMNFIAFDLLKISGTSLMENPLFTRKKQLDKLCKVLGIT
KDTSPLQIIETFKKGEELFDFVTEHNGEGLVAKKKTSTYRSTRSKDWLKIKNWRYVQLIV
TAYDKGNGYFEGSVLKDGELTAVTHFKHGMKDEEYTTLTALFKENGEKRGKETWTLPPSI
VVNIASIGFDGKQLREPQFDSFLMDAEPDGCTWNSLQRQLHPIPKQVEITHPDKPVWPSI
HLVKDDYLLYLQKAAPFFLPFLQDRLLTVIRFPHGADDESFYQKNTPDYAPSFIQTAVDE
DIEYILCNDLKSLLWLGNQLALEFHIPYQTIHQTKPAELVFDLDPPSVDEFGLAVQAALQ
MKEIFDQFHLTSYVKTSGNKGLQLYLPLPEEAFSYKQTRAFSEFVSIYLCEQNPEIFTIE
RLKKNRGGRLYIDYIQHDAGKTIIAPYSTRGHRRGLVATPLYWDEVGDKLTPDDFTIPRV
IERLRSEGDPFRSIRENLDEQGEAFAAVLGELKKLGKK
NT seq
1737 nt
NT seq
+upstream
nt +downstream
nt
ttggtttgggaaaatgaaacgccgcagctttatagcaggaacgaaaaagaattaacagca
aactttccagaaatcattgagtggtgccgctcgaattatgagcaagttaaagaatatctg
cctcttatattagacggtgagttggttcaccttaccaactcctatcaaagtgaattcaca
ttagtgcagcagcgcggcaaactgcggacaatagaatccatcacccgacacagcaggctt
tacccaatgaattttatcgcatttgacctcctaaaaatcagcggcacatctcttatggag
aatccacttttcacacgaaaaaaacagttagataagctatgcaaagtattaggcataaca
aaagatacatctcctctgcagatcatcgaaacatttaagaaaggagaggaactctttgac
tttgttacagaacataatggcgagggtcttgtagcaaagaagaagacgagtacgtaccga
tctacccgctcaaaagactggttgaaaattaaaaactggcgctatgttcaattaatagtg
accgcctatgataaaggaaacggatattttgaaggcagcgttttaaaagatggtgagctg
actgctgtaactcattttaaacacggaatgaaggatgaggagtacacgactctaactgca
ttatttaaggaaaatggcgaaaaaagagggaaagaaacgtggaccctgccaccatctatc
gtggtgaatatagcttctatcggctttgatggaaaacagcttcgtgaacctcagtttgat
tcatttttgatggacgcagaaccggatggttgcacatggaattctctacaaagacagctc
caccctatccctaaacaagttgaaatcactcatcctgacaagccagtttggccatctatt
catctagtgaaagatgattatcttttgtatttgcaaaaagcagctccattcttccttccc
tttttacaagacagactgttaactgttatccggtttccacacggagcagatgatgagtca
ttttaccagaaaaacacgcctgattatgccccatcgttcattcaaacggcagtcgatgag
gatattgaatatatactttgcaatgaccttaaaagcttattgtggcttggtaatcaatta
gcacttgagtttcacatcccgtatcagacgattcatcaaaccaagcctgcagaattagta
tttgatcttgatccgcccagtgtagatgaatttggactagctgttcaagcagccttacag
atgaaggagatctttgatcagtttcatctcacctcttatgtgaaaacgtcagggaataaa
ggacttcagctttatctcccgctgccagaggaagcattttcatataagcaaactagagca
tttagtgagtttgtcagtatttatttatgcgaacaaaaccctgagatatttaccattgag
cggctgaagaaaaatcgtggcggtcgtttatacattgattacattcagcatgatgctgga
aaaacaatcattgctccgtactcaacgagagggcacagacgagggcttgttgccactccg
ctttattgggatgaggttggtgacaaacttacacctgatgactttacgattccacgagta
atcgagcggttacgttcggaaggtgatccattccgcagcatacgtgaaaatcttgatgag
caaggagaagcgtttgcggcagtgcttggagagttgaagaagctggggaagaaataa
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