Bathycoccus prasinos: Bathy05g02250
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Entry
Bathy05g02250 CDS
T03089
Name
(RefSeq) hypothetical protein
KO
K03142
transcription initiation factor TFIIH subunit 2
Organism
bpg
Bathycoccus prasinos
Pathway
bpg03022
Basal transcription factors
bpg03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
bpg00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
Bathy05g02250
09124 Replication and repair
03420 Nucleotide excision repair
Bathy05g02250
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bpg03021
]
Bathy05g02250
03400 DNA repair and recombination proteins [BR:
bpg03400
]
Bathy05g02250
Transcription machinery [BR:
bpg03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
Bathy05g02250
DNA repair and recombination proteins [BR:
bpg03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
Bathy05g02250
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ssl1
C1_4
VWA_2
IBR
Motif
Other DBs
NCBI-GeneID:
19015728
NCBI-ProteinID:
XP_007513132
UniProt:
K8EW38
LinkDB
All DBs
Position
5:complement(401459..402817)
Genome browser
AA seq
452 aa
AA seq
DB search
MSSLEEEERGNRIPFEPDDPRYEFTAEEEENALKAYEKRYQKERTWEDLTEDAEGNLRSS
SLEKDRSQRRRFLANEKRKKIEKEASQSRVAKGMIRYCYVILDLSDAIHVEDMRPNRSAV
LLPLMIKFVREFFNQNPLSQLGLIACKDGKAERITELSGSPETHVKAIKKAFASDGVGGS
FSLQNGLEQAMEGLRDVPPFGAREIIAIISSLSTCDPGNINDSVRKVKKMKARTNVICVA
AETRVFKKLSEETKGKFSVSLDQSHLTRLIMECAPPPALLLETAKPALVEMGFPRREPRK
FGLGAGDEDDRDVLTIGPRNGEYRCPRCEARAEELPSQCGTCQLSLVSSPHLARSYHHLF
PVMPFVEVKVDGDSKNEEEEEKKRKKNSGKDDDDDGQFLRECFGCCVVVDASTGMLSKCL
KCEKEFCFACDVYIHDRLHNCVGCLSTALDKE
NT seq
1359 nt
NT seq
+upstream
nt +downstream
nt
atgtcgtcgctcgaagaagaagaacggggaaaccgaatcccgttcgaaccggacgaccct
cggtacgaattcaccgccgaagaggaagaaaacgcgttgaaagcgtacgaaaaacggtac
caaaaagaacgcacgtgggaagatttaacggaagatgccgagggaaacttacgctcgtcc
tcgctggaaaaggaccgatctcagcgacggcggtttctggcgaacgaaaagaggaagaaa
atcgagaaagaagcgtcgcagtccagagttgccaaagggatgattcggtactgttacgtg
attctcgatttgagcgacgcaatacacgtggaagacatgcgaccgaatcgaagcgcagtc
ctattaccgctgatgattaaattcgttcgagagtttttcaatcaaaaccccttgtcgcag
ttaggtttgatcgcgtgtaaagatgggaaagcggaacggattaccgaactgtccggatct
ccggagacgcacgtgaaggcgattaagaaggcgtttgcgagcgacggcgtcggggggagt
ttttcgttacaaaacgggttagagcaagcgatggaaggattgagagacgtgccaccgttt
ggtgcgagggagattatagcgattatttcgagtttgagcacgtgcgatccggggaatatc
aacgattcggtgaggaaagtgaagaagatgaaagcgaggacgaacgttatttgcgtggcg
gcggagacgagggtgtttaaaaagttaagcgaggagacaaaagggaagtttagcgtgagt
ttggaccagtcgcatttgacgagattgattatggagtgcgcgcctccgccggcgttgttg
ttggaaaccgcgaaaccggcgttggtggagatgggatttccgagacgagagccgaggaag
tttggcctaggcgccggagacgaggacgatcgagacgtgttgactattggacctaggaac
ggagagtatcggtgtccgagatgtgaggcgagagcggaggagctaccgagtcagtgtggg
acgtgtcagttatcgttggtatcttcgccgcacttggcgagaagttaccaccatttgttc
ccggtgatgccgtttgtggaagtgaaagtagacggcgattcaaaaaacgaggaggaagag
gagaagaagagaaaaaaaaacagcggtaaagatgatgatgatgatggacaatttctcaga
gagtgctttggatgttgtgtcgtggtggatgcgtcgactgggatgttgagtaagtgtctc
aaatgcgagaaagaattttgcttcgcgtgcgatgtatacattcacgaccggttgcataac
tgcgtcggatgtttatcgacggctttagacaaagagtag
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