Paraburkholderia phymatum: Bphy_0981
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Entry
Bphy_0981 CDS
T00704
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
bph
Paraburkholderia phymatum
Pathway
bph03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
bph00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
Bphy_0981
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bph03400
]
Bphy_0981
Enzymes [BR:
bph01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
Bphy_0981
DNA repair and recombination proteins [BR:
bph03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
Bphy_0981
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
ACC70170
UniProt:
B2JG88
LinkDB
All DBs
Position
1:1096745..1099609
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AA seq
954 aa
AA seq
DB search
MTDKLETYHRKRRFNETPEPSGVATRGNGRQAAKPAPPGKAARQHDLSFVIQEHDARRLH
YDFRLELDGTLKSWAVPKGPSLDPSVKRLAVHVEDHPIEYGSFEGDIPEGNYGAGSVIVW
DRGTWEPVGGEAGARDAYAAGKLKFHLKGHKLHGGWTLVRSHMRGSGDKEQWLLIKERDD
EARSEADFDVLEQRQGSVLSDAPGARGGAKGAARPVAGKWKTREERANASVRASKAAASR
RAKGTPDDRPDIVATRNSQSLRELAQHPSIEGAVEAKLPAALKPQLATLVDSAPAGDDWL
YEIKFDGYRILARIDHASKEPVKIFTRAGNDWSAKFGKQVKAIARVGVGSAWLDGEAVVL
DSHGVPDFQALQNAFDANRPQDITLYLFDLPYLNGYDLRGVPLEQRRAILRALLDTVDDD
TLRFSSDFGFDADQLLKSACDMQLEGIIGKRRDSLYVSGRSPAWIKLKCRRRQEFVIGGY
TEPAGSREAFGALLLGVYDAKGQLQYAGRVGTGFDASRLRSIKKELDGRETATMPFASEP
RERSRTRVHWVKPELVAECNFAEWTSDGVVRQASFVSLRSDKPAQQIVHEAPRKGADVQH
IAEESGAGQTKTSTAKQRVSKMPDVRDAPKTTTKRAGASSTSVGSAAAKSSGKTGAATVS
GVRISHPDRVIDKSTGVRKLELAEYYASVATWMLPYLKDRPVALVRAPEDIGGELFFQKH
SQRLAIPNITQHPGLDPGHPPLLTIESEAALVGAAQMGTIELHTWNAVAANIEKPDRMVF
DLDPDPALGWKRMIEAAQLTRELLAELGLESFCKTSGGKGLHVVVPIAKQLGWDDVKVFS
QAVAQHMATALPKHFAAKMGAQNRKGKIFVDYLRNNRGSSTVCAYSLRARPGLGVSVPLT
WDEVPETTAGDQWNIANVHERLDALKRDPWADYAKTRQRITAAMRRRLDTAERD
NT seq
2865 nt
NT seq
+upstream
nt +downstream
nt
atgaccgacaagctcgagacctatcatcgcaagcgacgcttcaatgaaacgccagagccg
tcgggcgttgccacacgcggaaacggcaggcaggccgccaagccggcgcccccgggaaaa
gcagccaggcagcacgacctgtcgttcgtgatccaggagcacgacgcgcggcgtctgcac
tacgacttccgtctcgaactcgacggtaccttgaagtcatgggcggtgccgaaggggccg
agcctcgatccatcggtcaaacggctcgcggtgcatgtcgaagatcatcccatcgaatac
ggctcgttcgagggcgacattcccgagggtaattacggcgcgggttccgtgatcgtctgg
gatcgcggcacatgggaacccgtcggcggcgaagcgggcgcgcgcgacgcgtacgcggcg
ggcaagctcaagtttcatctgaagggtcacaagctgcacggcggctggacgctcgtgcgc
agccatatgcgcggcagcggcgacaaggagcaatggctgctcatcaaggagcgcgatgac
gaggcgcgcagcgaagccgacttcgacgtgctcgaacagcggcagggcagcgtgctgtcg
gatgcaccgggcgcgcgcggcggtgcaaaaggagcggcccgacccgtcgccggcaaatgg
aagaccagggaagagcgtgcgaacgcgtcggtcagggcgtcgaaggcggcggcgtcacgc
agggccaaaggcacgcccgacgatcgccccgacatcgtcgcgacgcgcaactcgcagtcg
ctgcgagaactcgcgcagcatccgtcgatcgaaggcgcggtcgaggcgaagctgcctgcc
gcgctcaagccgcagctcgcgacgctcgtcgacagcgcgccggccggcgacgactggctt
tacgagatcaagttcgacggctaccgcatcctggcgcgcatcgatcacgcatcgaaggag
cccgtgaagattttcacgcgtgcgggcaacgactggagcgcgaagttcggcaagcaggtg
aaggcgattgcgcgcgtcggtgtgggcagcgcgtggctcgacggcgaagcggtggtgctc
gacagccacggcgtgccggatttccaggcgctgcaaaatgccttcgatgcgaaccgtccg
caagacatcacgctctatctgttcgacttaccgtatctcaacggctacgacttgcgcggc
gtgccgctcgaacagcgtcgcgcgatcctgcgcgcgctgctcgacaccgtcgacgacgac
acattgcgcttctcgtccgacttcggcttcgacgccgatcagttgctgaagagcgcatgc
gacatgcagctggaaggcatcatcggcaagcgccgcgacagcctgtatgtgtcgggccgc
tcgcccgcgtggatcaagctcaagtgccggcgccggcaggagttcgtgatcggcggctat
acggaaccggcgggcagccgcgaggcgttcggcgcgctgctgctcggtgtatatgacgcg
aagggacagctgcaatacgcggggcgagtcggcacgggtttcgatgcaagccggttgcgc
tccatcaagaaggaactggacgggcgcgaaacggcgacgatgccgttcgcgagcgagccg
cgcgaacgaagccgcacgcgcgtgcattgggtgaagcccgaactcgtcgcagaatgcaac
ttcgcggaatggacgagcgacggcgtcgtgcggcaggcgtcgttcgtcagtctgcgcagc
gacaagcccgcgcaacagatcgtccatgaagcgccacgcaagggggctgacgtgcaacat
atcgcggaagaatcgggtgccgggcagacgaagacgtcgacggcgaaacagcgggtgtcg
aagatgccggatgttcgggacgcgcccaagaccacaacgaagcgcgcgggcgcgtcttca
accagcgtcggcagtgccgccgcgaaatcgtccggcaagacgggtgcggcgaccgtctct
ggcgtacgcatctcgcatcccgaccgcgtaatcgacaagagcaccggcgtgcgcaagctc
gaactcgctgaatactacgcatcggttgcgacgtggatgcttccgtatctgaaggaccgc
cccgttgcgctcgtgcgagcgccggaggacatcggcggcgagctgttcttccagaagcac
agccagaggctcgcgatcccgaacatcacgcagcatcccggactggaccccggtcatccg
ccgctgctgacgatcgagagcgaagcggcgctggtcggcgcagcgcagatgggcacgatc
gaactgcacacgtggaacgcggtggccgcgaacatcgagaagccggaccgcatggtgttc
gatctcgacccggacccggcgctcggctggaagcggatgatcgaagcagcgcagctcacg
cgcgagctgctcgccgaactaggccttgagtcgttttgcaagacgagcggcggcaagggg
ctgcacgtcgtcgtgccgatcgcgaagcagctgggctgggacgacgtgaaggtgttttcg
caagccgtcgcgcagcatatggcgaccgcgctgccgaaacacttcgctgcgaagatgggc
gcgcagaaccgcaagggcaagattttcgtcgactatctgcgcaacaaccgcggttcgagc
accgtctgcgcgtactcgctacgcgcgcgtcctggcctgggggtgtcggtaccgctcacg
tgggatgaagtgcccgagaccacggcaggcgatcaatggaacatcgcgaacgtccatgag
cggctcgacgcgctgaagcgcgatccgtgggccgattacgcgaagacccggcagcgcatc
acagccgccatgcggcgcaggctcgatacggcggaacgcgattga
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