Candidatus Brocadia pituitae: BPIT_18050
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Entry
BPIT_18050 CDS
T07694
Name
(GenBank) recombinase RecD
KO
K03581
exodeoxyribonuclease V alpha subunit [EC:
3.1.11.5
]
Organism
bpit
Candidatus Brocadia pituitae
Pathway
bpit03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
bpit00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
BPIT_18050
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bpit03400
]
BPIT_18050
Enzymes [BR:
bpit01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
BPIT_18050
DNA repair and recombination proteins [BR:
bpit03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
BPIT_18050
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_19
AAA_30
HHH_4
SH3_13
UvrD_C_2
Viral_helicase1
AAA_11
HHH_5
AAA_22
Helicase_RecD
AAA_18
AAA
TrwB_AAD_bind
AAA_28
T2SSE
UvrD_C
ABC_tran
PIF1
UvrD-helicase
CbiA
Rad17
Mg_chelatase
nSTAND3
SchA_CurD
SRP54
Thymidylate_kin
TsaE
HHH_2
KTI12
AAA_25
Zeta_toxin
PhoH
MeaB
Psb28
NTPase_1
AAA_5
AAA_17
Motif
Other DBs
NCBI-ProteinID:
BBO17513
LinkDB
All DBs
Position
2049532..2052078
Genome browser
AA seq
848 aa
AA seq
DB search
MKQLSQAQPASNLVRLSGIVERVTFHNAENGWSVLKVAPFNEPHKLVTVIIHQAKVFAGS
SMEFYGTWSYHQKHGEQFKAERAIEKKPSTSAALEKYLGSGLIKNVGPKTAQKIVKFFNE
RTLEVFEEHIDELIKVPGIAEKKLFDIKNSWQEHRAIRDVMIFLQGYGISTLFAVKIYKT
YGNDAISTVLANPYQLARDIYGIGFFSADKIALNMGFEKEGVPRIEAGIKHVLASARDNG
HCYLLESQIIKNTQELLETGTPEQITGILLALTKTNEIKKMVLSDEKGQEVTAYYSNSIF
FDEQYVSRRIKQWTSQSVVVDQNRIARWLEQYCHKQSIILSEEQQASVAGMVGKSFSILT
GGPGCGKTTTTKALVKLLQAMQKRVVLAAPTGRASQRMSEVIGYEAKTIHRLLEWAPDKN
GFRKGEDDPLQLDYLIVDECSMLDINLAASLLKAVPRNAQVLFVGDPDQLPSVGAGNVLH
DILQATCVPSFRLTRVFRQAEESMIIRFAHQINKGQIPKIDSPFFKPELWKDKAGCLFVD
AEEATQEQLQFLGRAKAAIRHTVTTGEEQVLQTGDKITGVMKREEDTLLIDSLLVQECRE
ESEIYAPVFNIPEKFKHVDLMKVHHAQGGIEQLKSIIKSVHPWSALHHGMTGLDMVLRLY
TRTIPEYYGKDIEIQILSPQVRGSLGTHNLNQVIQQAVNPEQQGKKQIQIGERIYREGDR
VIQTRNNYDLGVYNGDIGRIKAIDLESYSCQIQFGKHAPITYEREDLTEISLAYGITIHK
SQGSEFDAVIIPIASQHFKMLFRNLVYTGLTRAKQLCVFVGSRKALSMAVKQIDNRKRQT
ALSYLITK
NT seq
2547 nt
NT seq
+upstream
nt +downstream
nt
atgaaacaattatcccaggcacaaccagccagtaatcttgtccgtctttctggaattgtc
gaaagggtcacgtttcataatgcggaaaatggctggtctgttctgaaagttgcccccttt
aacgaaccgcataaactcgtaaccgttattatccatcaagcaaaggtctttgctggcagt
tcaatggagttctacggtacatggagctaccatcagaagcacggcgaacaattcaaggca
gaacgggcaatcgagaaaaaaccgtcaactagtgcagcgctcgaaaagtatcttgggtcg
ggtcttatcaagaatgtcggccccaagaccgcacaaaaaatagtcaagttcttcaatgaa
cgtacgctagaggtttttgaagagcatatagatgagcttatcaaagttccgggaattgct
gaaaagaaacttttcgatattaaaaacagttggcaggagcatagggcaatccgtgacgtg
atgatcttcctgcaaggatacggcatcagcactctttttgcggtcaagatctataaaacc
tatggcaatgatgcaatcagcacggtgttggcgaatccctatcagcttgcgagggacatc
tatgggatagggtttttttcagccgataagattgccctgaatatgggcttcgagaaagag
ggagttccccgtattgaggcaggcataaaacacgtcttggcgtcagcgcgggataatggc
cactgctatcttttagagtcacagattatcaaaaacactcaggagctgcttgaaacggga
acaccggagcagataacaggcatattacttgctctgacaaagaccaacgagataaagaag
atggttctgtctgatgaaaaggggcaggaagtcaccgcttattattccaattccatcttc
ttcgatgagcaatatgtttccaggcggatcaagcaatggacttctcagtctgttgttgtt
gatcagaacagaattgcccgttggcttgagcagtattgccataagcaaagcattatcctt
tctgaagagcagcaggcatccgtagcggggatggtaggcaagtccttttctatcctgaca
ggtgggcctggctgtgggaagacaaccacaaccaaggcgctcgtcaaactccttcaagcc
atgcaaaaaagggttgttcttgcagctccaacagggagggcgtcccaacggatgagcgag
gttatcggatatgaggccaaaactattcatcgtctgcttgaatgggcacccgacaagaat
ggatttagaaaaggtgaagacgacccgcttcagcttgattatctgattgttgatgaatgt
tccatgctggatataaacttagcagcctcactcctcaaggcagttccccggaatgcgcag
gtgctctttgtgggtgacccggaccaattgccgtccgtaggcgcgggaaatgtgttgcac
gacattctccaagcaacctgtgtaccgagcttcagattgaccagggtattccgtcaggca
gaggagtcgatgattatccggtttgcccatcaaataaacaaggggcagattccgaagatt
gactccccgttctttaagccagaattgtggaaggacaaagcaggatgcctttttgttgat
gcggaggaagcaacacaggagcaattgcaattcttaggcagggcaaaggcggccatcagg
cataccgtcacgaccggagaggaacaagtattgcagacaggggataaaatcacaggggtt
atgaaacgagaagaagataccttgctgattgatagccttcttgtgcaagaatgcagggaa
gaatcggagatttatgcacctgtattcaacatcccggagaagtttaagcatgtcgatttg
atgaaggttcatcatgcccagggaggtattgagcaactaaagtccataatcaagtcagtt
cacccgtggtcagcgcttcatcacggaatgacagggcttgatatggttttgcgattatat
accaggactatcccggaatactatgggaaggatatagagatacaaattctgtccccgcag
gtacggggcagtcttggaacgcataacctgaatcaggtcattcagcaagcggtgaatcct
gagcagcaggggaagaagcagattcagataggtgagcgtatctaccgtgagggtgacagg
gtcatccagacccgcaataattatgacttaggtgtttacaatggagatattggacggata
aaggcaattgatctggaaagctactcctgtcagattcagttcgggaagcatgccccaatt
acctatgagcgggaagacctaacggagatatcccttgcatatgggattaccatacataaa
tcgcaggggagtgaattcgatgcggttatcattcccattgcctctcaacatttcaagatg
ctgtttaggaatcttgtatatactggcttgacgagggcaaaacaattgtgcgtctttgtt
ggcagcaggaaggcgctctcaatggcagtgaagcagattgacaatcgtaagaggcaaacg
gcattaagctatcttattacaaaataa
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