Burkholderia pseudomallei NCTC 13179: BBK_398
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Entry
BBK_398 CDS
T02894
Symbol
dnaE
Name
(GenBank) polc: DNA polymerase III, alpha subunit
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
bpk
Burkholderia pseudomallei NCTC 13179
Pathway
bpk03030
DNA replication
bpk03430
Mismatch repair
bpk03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
bpk00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
BBK_398 (dnaE)
03430 Mismatch repair
BBK_398 (dnaE)
03440 Homologous recombination
BBK_398 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
bpk03032
]
BBK_398 (dnaE)
03400 DNA repair and recombination proteins [BR:
bpk03400
]
BBK_398 (dnaE)
Enzymes [BR:
bpk01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
BBK_398 (dnaE)
DNA replication proteins [BR:
bpk03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
BBK_398 (dnaE)
DNA repair and recombination proteins [BR:
bpk03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
BBK_398 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
DNA_pol_IIIA_C
RecG_wedge
Nitr_red_assoc
Motif
Other DBs
NCBI-ProteinID:
AGZ28268
LinkDB
All DBs
Position
1:complement(483814..487338)
Genome browser
AA seq
1174 aa
AA seq
DB search
MSDPRFVHLRVHSEFSIADGIVRLDDIVKSAAEDGQGALALTDLGNAFGLVRFYKEARDA
GIKPIAGCDVWITNHDDRDKPSRLLLLVKDKRGYLNLCELLSKAWLTNQYRGRAELDASW
LEGELAEGLLALSGAQQGDIGLALAAGNEAAARRHAQRWARVFPGGFYIELQRYGQPGAE
AYIQQAVAIAAELKLPVVATHPLQYMTADDFTAHEARVCISEGDILANPRRQKRFTTEQF
FRTQGDMAALFADLPSALANTVEIAKRCNLTLELGKPKLPRFPTPDGMSLDDYLVQLSQE
GLDKRLVQLYPDEAEREAQRGKYNQRLDFECGTIKKMGFPGYFLIVADFINWAKNNGVPV
GPGRGSGAGSLVAYSLGITDLDPLRYNLLFERFLNPERVSMPDFDIDFCQHGRDRVIQYV
KEKYGADAVSQIATFGTMAAKAAVRDIGRVLDLGYMFTDGVAKLIPFKPGKHVTIADAMK
EEPLLQERYDNEDEVHQLLDLAQRVEGLTRNVGMHAGGVLIAPGKLTDFCPLYTQGDEGG
VVSQYDKDDVEAVGLVKFDFLGLTTLTILDWAERYIRRLDPSKENWSLAQVPLDDPTSFQ
ILKKANTVAVFQLESRGMQGMLKDAQPDRFEDIIALVSLYRPGPMDLIPSFCARKHGREK
VDYPDPRVEPVLKETYGIMVYQEQVMQMAQIIGGYSLGGADLLRRAMGKKKPEEMAKHRE
IFAEGAAKNGLTREKSDEIFDLMEKFAGYGFNKSHAAAYALLAYYTAWLKAHHPAEFMAA
NMTLAMDDTDKVKILFDDCLVNGLAVLPPDINRSNYRFEPVAEADGKRSRTIRYGLGAIK
GSGQNAIEEILRAREEKPFADLFDFCERIDRRVVNRRTIEAMIRAGAFDSLHENRAQLLA
SVPLAMEAAEQAAANALQAGLFDIGGVPAHQHALVDEPAWDDKRRLQEEKGALGFYLSGH
LFDAYRDEVRRFVRQKLGELKEGRDKVVAGVIASLRTQMTQRGKMVIALLDDGTGQCEVT
VFNEQFDANRALFKEDELLIVQGQARNDAFTGGIRFTAESVMDLERARSRYAQAVRMTMN
GNADAAALRRVLEAHVAKPDETPPAAAPAPRGGRDGGRRAQAAIPNGLAVRIAYSNARAQ
GEMRLGDAWRVKPSDALLADLRAAFGGSVVEIVY
NT seq
3525 nt
NT seq
+upstream
nt +downstream
nt
atgtcagatccccgtttcgttcacctccgcgtccactccgaattctcgattgccgacggc
atcgtgcgtctcgacgatatcgtcaagtcggcggccgaagacggtcagggcgcgcttgca
ctgaccgacctcggcaacgcgttcggtctcgtccgtttctacaaggaagcccgcgatgcg
ggcatcaagccgatcgccggctgcgatgtctggatcaccaaccacgacgatcgcgacaag
ccgtcgcggctgctgctgctcgtcaaggacaagcgcggctacctgaacctctgcgagctg
ctgtcgaaggcgtggctcacgaaccaataccgcggccgcgcggagctcgacgcgagctgg
ctcgaaggcgagctcgccgaagggctgctcgcgctgtcaggcgcgcagcagggcgacatc
ggcctcgcgctcgcggcgggcaacgaggcggccgcgcgccgccacgcgcagcgctgggcg
cgggtgttcccgggcggtttctatatcgaattgcagcgctacggccagccgggcgcggaa
gcgtacatccagcaggcggtggcgatcgcggcggagctgaagctgcccgtcgtcgcgacg
catccgctgcagtacatgacggccgacgatttcaccgcgcacgaggcgcgcgtgtgcatc
tcggaaggcgacatcctcgcgaatccgcgccgccagaaacgcttcacgaccgagcagttc
ttccgcacgcagggcgacatggccgcgctgttcgccgatctgccctcggcgctcgcgaac
acggtcgagatcgccaagcgctgcaacctgacgctcgagctcggcaagccgaagctgccg
cggttcccgacgcccgacggcatgtcgctcgacgactacctcgtgcagttgtcgcaggaa
gggctcgacaaacgcctcgtgcagctctacccggacgaggccgagcgcgaagcgcaacgc
gggaagtacaatcagcgtctcgatttcgagtgcggcacgatcaagaagatgggctttccg
ggctacttcctgatcgtcgcggacttcatcaactgggcgaagaacaacggcgtgccggtg
ggccccgggcggggctcgggcgcgggctcgctcgtcgcgtattcgctcggcatcaccgac
ctcgatccgctgcgctacaacctgctgttcgagcgcttcctgaacccggagcgggtgtcg
atgcccgacttcgacatcgacttctgccagcacggccgcgaccgcgtgatccagtacgtg
aaggagaagtacggcgcggacgcggtgtcgcagatcgccaccttcggcacgatggccgcg
aaggcggccgtgcgggatatcggccgggtgctcgatctcggctacatgttcaccgacggc
gtcgcgaagctgatcccgttcaagccgggcaagcacgtgacgatcgccgacgcgatgaag
gaagagccgctcctgcaggagcgctacgacaacgaggacgaagtccatcagttgctcgat
ctcgcgcagcgcgtggagggcctcacgcgcaacgtcgggatgcacgcgggcggcgtgctg
atcgcgcccggcaagctgaccgatttctgccctctctacacgcagggcgacgaaggcggc
gtcgtcagccagtacgacaaggacgacgtcgaagccgtcggcctcgtgaagttcgacttt
ctcggcctcacgacgctcacgattctcgactgggccgagcgctacattcgccgtctcgat
ccgagcaaggagaactggtcgctcgcgcaggtgccgctcgacgatccgacgtcgttccag
atcctcaagaaggccaacacggtcgccgtgttccagctggaaagccgcggcatgcagggg
atgctgaaggacgcgcagcccgaccgcttcgaggacatcatcgcgctcgtgtcgttgtac
cggccgggcccgatggacctgattccgagcttctgcgcgcgcaagcacgggcgcgagaag
gtcgactatccggatccgcgcgtcgagcctgtcctgaaagagacctacgggatcatggtc
tatcaggagcaggtgatgcagatggcgcagatcatcggcggctattcgctcggcggcgcg
gacttgctgcgtcgcgcgatgggcaagaagaagcccgaggagatggccaagcatcgcgag
atcttcgccgagggcgccgcgaagaacggcctcacgcgcgagaagtccgacgagatcttc
gacctgatggagaagttcgcgggctacggcttcaacaagtcgcacgcggccgcgtacgcg
ctgctcgcgtattacaccgcgtggctgaaggcgcaccatccggccgaattcatggcggcc
aacatgacgctcgcgatggacgacaccgacaaggtgaagatcctgttcgacgattgcctc
gtcaacggcctcgccgtgctgccgcccgacatcaaccgctcgaactatcgcttcgagccc
gtcgccgaggccgacggcaaacgctcgcgcacgatccgctacggcctcggcgcgatcaag
ggcagcggccagaacgcgatcgaggagatcctgcgcgcacgcgaggaaaagccgttcgcc
gatctgttcgatttctgcgagcggatcgaccgccgcgtcgtgaaccgccgcacgatcgaa
gcgatgattcgcgcgggcgcattcgattcgctgcacgagaatcgcgcgcagttgctcgca
tcggtgccgctcgcgatggaggccgccgagcaggcggccgcgaacgcgctgcaggcgggc
ctgttcgacatcggcggcgtgcccgcgcaccagcacgcgctcgtcgacgagccggcgtgg
gacgacaagcgtcgcctgcaggaagagaagggcgcgctcggcttctacctgtccggccac
ctgttcgacgcgtatcgcgacgaggtgcgccgtttcgtgcgccagaagctcggcgagctg
aaggaagggcgcgacaaggtggtggccggcgtgatcgcgtcgttgcgcacgcagatgacg
cagcgcggcaagatggtgatcgcgttgctcgacgacggcaccggccagtgcgaagtcacc
gtgttcaacgagcagttcgacgcgaaccgcgcgctcttcaaggaggacgagctgctgatc
gtccaggggcaggcgcgcaacgacgcgttcacgggcggaattcgcttcaccgccgagtcg
gtgatggacctcgagcgtgcgcgcagccgctacgcgcaggcggtgcggatgacgatgaac
ggcaacgcggacgcggcggcgctgcgccgcgtgctggaagcgcacgtcgcgaaacccgac
gagacgccacccgccgcggcgccggcgccgcgcggcggccgcgacggcgggcggcgggcg
caggcggcgataccgaatggtctcgccgtgcggatcgcatacagcaacgcgcgtgcgcaa
ggcgagatgcgcctgggcgacgcatggcgcgtgaagccgagcgacgcgttgctcgccgat
ctgcgcgcggcgttcggcggcagcgtcgtcgagatcgtctactga
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integrated database retrieval system
