Burkholderia pseudomallei 1106a: BURPS1106A_A2988
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Entry
BURPS1106A_A2988 CDS
T00480
Name
(GenBank) DNA ligase, ATP-dependent
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
bpl
Burkholderia pseudomallei 1106a
Pathway
bpl03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
bpl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
BURPS1106A_A2988
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bpl03400
]
BURPS1106A_A2988
Enzymes [BR:
bpl01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
BURPS1106A_A2988
DNA repair and recombination proteins [BR:
bpl03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
BURPS1106A_A2988
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
ABN95638
UniProt:
A3P9K7
LinkDB
All DBs
Position
II:complement(2909311..2912802)
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AA seq
1163 aa
AA seq
DB search
MAGKLSVYRSRRRFGETPEPEGARRSPRRTKGAGRAGDESKRRARGDAAASSRGERVARR
GRAQQPAPARGRSALHYVIQEHHARRLHYDFRLELDGTLKSWAIPKGPSLDPSVKRLAVH
VEDHPLEYAAFEGEIPEGHYGAGSVIVWDRGAWTPAGGIAAARAGYRAGKLSFTLDGDKL
HGGWALVRGRGLRDSGGKHEQWLLIKERDGDARDQADYDVLRARPGSVLGGARSARARRG
RAAEPTERDAAAPKRARASVPKGRAEAKTSGRAPRTVSNGTAGAGKGASKRASKREGTNT
GNGARSGKGSGKGSGKGAGKGAGKGGATPRRKRAAAPQSFDVDSADTDSPAARGLALPAG
LAARFGLSGAKRAALPRTLRPQLATLVDAPPPGKDWLYEAKFDGYRVLIRIDRGAASRPI
AVYTREGLDWSAKFAAQLDALARLPVDRGWLDGEAVVLDRAGVPDFQALQNALGAGRSND
VTLFLFDVPFLNGFDLRGVPLERRRALLAALVAAHASDVLRYSESLAFEAADLLTGACDA
GLEGLIGKRRDGRYVEGRSRSWIKLKCRRRQEFVIGGYTEPAGRRSGFGALLLGVYARAP
GDEGDEGERRTRGAAETRDERRRASHASRTSRAPDAGAARTPQARPLALRYVGRVGTGFG
ERTLRALARTLREHETGRMPFADVPRERSGTPVHWVKPVLVAECEFAEWTGDGIVRQASF
VGLREDKPARTIVREQPQSMETEAMNEHADEHTDEHTDARAERRTGGRTRRKARDGGARD
APPLARHPKRGDAGSSARKGARDGEAGKRAAAGSSPSSSPSSSTSTSISASGRTRGGGRS
ASRDRAGDADEGANEDANDHAPRERAGAPKVAGVRVSHPGRVIDPHTGTRKLDLVEYWEW
IAPWLLPHLKGRPVSLVRAPADIGSELFFQKHADKLEIPNVALHPGLDPGHEALITIDDV
KGLVGAAQMGTIELHTWNAHVSNIEKPDRAVFDLDPDPSLDWRAVIEAAQLTRALLDELG
LVSFCKTSGGKGLHVVVPLARHAGWDDVKAFAHAVARHMAATLPERFTATMGPRNRKGKI
FVDYLRNNRGASTIAAYSVRARPGLGVSVPIAWDELPDTTGAAQWTLANLHERLDALKHD
PWRAYAHVRQRVTAALRKRLSDG
NT seq
3492 nt
NT seq
+upstream
nt +downstream
nt
atggcgggaaaactcagcgtgtaccgcagcaggcggcgcttcggcgaaacgccggagccc
gagggcgcgcggcggtcgccgcgccgcacgaaaggcgcgggccgcgcgggcgacgaatcg
aagcggcgcgcgcgcggcgatgcggcggcgtcgagccgcggcgagcgcgtcgctcgccgt
ggccgcgcgcagcagccggcgccggcgcgcggcaggtccgcgcttcattacgtgatccag
gagcatcacgcgcgtcgcttgcattacgactttcgtctcgaactcgatggcacgctcaaa
tcgtgggcgatcccgaaagggccgagcctcgatccttcggtcaagcggctcgcggtgcac
gtcgaggatcatccgctcgaatacgcggcgttcgagggcgagattccggagggccattac
ggcgcgggctcggtgattgtctgggatcgcggcgcatggacgcccgccggtggcatcgcc
gccgcgcgcgccggctatcgcgcgggcaagctgagcttcacgctcgacggggacaagctg
cacggcggctgggcgctcgtgcgcggccgcgggctgcgtgacagcggcggcaagcacgag
caatggctgctgatcaaggaacgcgacggcgacgcgcgcgaccaagcggactacgacgtg
ctgcgcgcacggccgggcagcgtgctcggcggcgcgcggtccgcgcgggcgaggcgcggg
cgcgcggccgagccgacggagcgcgacgccgccgcgccgaagcgggcgcgcgcttcagtg
ccgaaagggcgcgccgaagcgaagacgagcgggcgtgcgccgcgcaccgtgtcgaacggg
actgcgggcgcgggtaagggcgcaagcaagcgtgcaagcaagcgcgagggcacgaatacc
ggaaacggcgcgagaagcggcaagggcagcggcaagggcagcggcaagggcgcgggcaag
ggcgcgggcaagggcggggccacaccgcgccgcaaacgcgccgccgcgccgcagtcgttc
gacgtcgattcggccgataccgattcacccgcggcgcgcggcctcgcgttgcccgccggg
cttgccgcgcgcttcggcctgagcggcgcgaagcgcgcggcgctgccgcgcacgttgcgg
ccgcaactggcgacgctcgtcgacgcgccgccgcccggcaaagactggctatacgaagcg
aagttcgacggctaccgcgtgctgatccggatcgatcgcggcgcggcgtcccgcccgatt
gccgtctacacgcgcgaggggctcgactggagcgcgaaattcgccgcgcagctcgacgcg
ctcgcgcgcctgccggtcgaccggggctggctcgacggcgaggcggtcgtgctcgatcgc
gcgggcgtgccggatttccaggcgctgcagaacgcgctcggcgccggacgctcgaacgat
gtcacgctgttcctgttcgacgtgccgttcctgaacggcttcgacctgcgcggcgtgccg
ctcgaacggcggcgcgcgctgctcgccgcgctcgtcgccgcgcatgcgagcgacgtgctg
cgttactcggagagcctcgcgttcgaggccgccgatctgctgacgggcgcgtgcgacgcg
gggctcgaagggctgatcggcaagcggcgcgatggccggtacgtcgaggggcgctcgaga
tcgtggatcaagctgaagtgccggcgcaggcaggagttcgtgattggcggctacacggag
ccggccggacggcgcagcggattcggcgcgttgctgctcggcgtgtacgcccgggcgccg
ggcgacgagggcgacgagggcgaacgaaggacgcgcggcgcggccgaaacgcgcgacgag
cggcgtcgtgcatcccacgcatcccgcacatcccgcgcgcccgatgccggcgcggcgcgc
acaccgcaggcgcggccgctcgcgttgcgctacgtcggccgcgtcggcaccggcttcggc
gagcgcacgcttcgcgcgctcgcgcggacgctgcgcgagcacgagaccgggcggatgccg
ttcgcggacgtgccgcgcgagcgcagcggcacgccggttcactgggtgaagcccgtgctc
gtcgccgaatgcgaattcgcggaatggacgggcgacggcatcgtccggcaggcgtcgttc
gtcgggctgcgcgaagacaagccggcgcgcacgatcgttcgcgagcaaccgcaatccatg
gagacggaagccatgaatgaacacgctgacgaacatacggatgaacataccgatgcacgc
gccgaacgtcgcaccggcggacgcacgcggcgcaaagcacgtgacggcggcgcgcgcgac
gcgccgccgcttgcccgccatccgaagcgcggcgatgcgggatcgtccgcgcgcaagggc
gcgcgggacggggaggcgggcaagcgcgccgccgcgggatcgtcgccttcgtcttcaccg
tcgagttcgacttcgacttcgatttcggcgtcagggcgcacgcgcgggggcggtcgttcc
gcctcgcgcgatcgagccggcgatgcggacgaaggcgcgaacgaagacgcgaacgatcac
gcgccgcgcgagcgcgccggcgcgccgaaggtggcgggcgtgcgcgtctcgcatcccggc
cgcgtgatcgatccgcacacgggcacgcgcaagctcgacctcgtcgaatactgggaatgg
atcgcgccgtggctgctgccgcatctgaagggccggccggtgtcgctcgtgcgcgcgccc
gccgacatcggcagcgagctgttcttccagaagcacgcggacaagctggagattccgaac
gtcgcgctgcacccggggctcgacccgggccatgaggcgctcatcacgatcgacgatgtg
aaggggctcgtcggcgccgcgcaaatgggcacgatcgagctgcacacgtggaacgcgcac
gtgtcgaacatcgagaagccggaccgcgcggtgttcgacctcgacccggacccgtcgctc
gactggcgcgcggtgatcgaggccgcgcagctcacgcgcgcgctgctggacgagctcggc
ctcgtgtcgttctgcaagacgagcggcggcaaggggctgcacgtcgtcgtgccgctcgcg
cgccatgcgggctgggacgatgtgaaggcgttcgcgcacgcggtggcgcggcacatggcg
gcgaccctgcccgagcgcttcaccgcgacgatggggccgcgcaaccggaagggcaagatc
ttcgtcgactatctgcgcaacaaccgcggcgcgagcacgatcgccgcgtactcggtgcgc
gcgaggccggggcttggcgtatcggtgccgatcgcatgggacgaactgccggatacgacg
ggcgccgcgcaatggacgctcgcgaacctgcacgagcgtctcgacgcgctgaagcacgac
ccgtggcgcgcctatgcgcatgtgcggcaacgcgtgacggcggcgttgcggaagcggctg
agcgatgggtag
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