Burkholderia plantarii ATCC 43733: bpln_1g10960
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Entry
bpln_1g10960 CDS
T04139
Name
(GenBank) DNA primase small subunit
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
bpla
Burkholderia plantarii ATCC 43733
Pathway
bpla03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
bpla00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
bpln_1g10960
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bpla03400
]
bpln_1g10960
Enzymes [BR:
bpla01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
bpln_1g10960
DNA repair and recombination proteins [BR:
bpla03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
bpln_1g10960
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
DNA_primase_S
HC2
Motif
Other DBs
NCBI-ProteinID:
ALK29916
LinkDB
All DBs
Position
1:1284771..1287569
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AA seq
932 aa
AA seq
DB search
MADPLSEYQRRRRFDATPEPAGAKRRRGAAGPLHFVVQEHHARRLHYDFRLELDGVLKSW
AVPKGPSLDPADKRLAVHVEDHPLDYAGFEGEIPPGHYGAGSVRIDDHGVWRPDGGVAGA
RRGYRDGKLTFELDGTKLRGRWSLIRTAMPGAGGKSSWLLVKARDDAAGDVPADEPATGR
RIRHGKAAAKRAATKPAATKPAATKPAATKPAATKPAATKPAATKPAATKSTATKSTATK
SRTRSDLPGARRAALPDTLAPQLAMLVAVPPEDEGWRYEMKFDGYRVLIRIAGRGRRRTV
RVLTREGLDWSAKFGAQCAAFAALPVDNAWLDAEAVVLDARGVPDFSALQQALSDGNDAA
IVCFVFDLLHLDGRALQAVPLEARRERLAALLADSDSGCLRFSPTLDGPPAALLEAAAQA
GLEGLIGKRADGAYRAGRGSQWIKLKCRQRQEFVIGGYSAPRGSRSHFGALLLGVHAAPD
GARRHGRHGAREPRALQYVGRVGTGFDARQLAALAKRLAALECERAPFAVPPPSRGDAVR
WVEPTLVAECEFAGWTADGLVRQAAFVALRDDKPAARIVRETAVPTAGQTTGTRMATTEP
VTAGNARRGHRAGANEPTKATKATKATKATKATKAADSTVAGVRITHPERMVDPDGGFRK
IDVVRYYASVARWLLPQLSGRPVSLVRYMKGVGGESFFQKHAGERGMGFVTRHPGLDPGH
DALMTLDDTAALVGAAQFDALEFHTWNATVDRIERPERLVFDLDPDPALPWERMIEAAGL
VRALLDALGLPAFCKTSGGKGLHLVVPITRHTEWDDAKAFSQAVARHLAGQLPDRFTAKM
GPENRKGLIFVDYLRNGRGASTVAAYSARARPGMGVSVPLTWEEVAATTGGAQWTIANLP
ARLDTQRADPWEDYDAARTRITAAMRRRLGKL
NT seq
2799 nt
NT seq
+upstream
nt +downstream
nt
atggccgaccccctttccgaataccagcgcaggcgccgcttcgacgcgacgcccgagccg
gccggcgcgaagcggcggcgtggcgcggccgggccgctgcatttcgtggtgcaggagcat
cacgcgcggcgcctgcattacgacttccgtctcgaactggacggcgtgctgaaatcgtgg
gccgtgccgaaaggcccgagcctcgatccggccgacaagcggctcgccgtccacgtcgag
gaccatccgctcgactacgcgggtttcgagggcgagattccgcccggccactacggcgcg
ggtagcgtgcggatcgacgaccacggcgtctggcggcccgacggcggcgtggcgggcgca
cggcgcggctatcgcgacggcaagctcacgttcgaactcgacggcacgaagctgcggggg
cgctggtcgctgatccgcaccgcgatgccgggagccgggggcaagtcgtcgtggctgctc
gtgaaggcgcgcgacgacgcggccggcgacgtaccggcggacgaacccgccacgggacga
cgcatccggcacggcaaggcggcggcgaagcgagccgccacgaaaccggccgccacgaaa
ccggccgccacgaaaccggccgccacgaaaccggccgccacgaaaccggccgccacgaaa
ccggccgccacgaaaccggccgccacgaaatcgacggcaacgaaatcgacggcaacgaaa
tcgcgcacccgaagcgatcttcccggcgcgcgccgcgccgcgttgccggacacgctcgcg
ccgcagctcgcgatgctcgtcgccgtgccgcccgaggacgagggctggcgctacgagatg
aagttcgacggctaccgcgtgctgatccgcatcgccggtcgcggcaggcgccgtacggtg
cgcgtgctgacgcgcgagggcctcgactggagcgcgaagtttggcgcgcagtgcgcggcg
ttcgcggcgctgccggtcgacaacgcctggctcgacgccgaggccgtcgtgctcgacgcg
cgcggcgtccccgatttttcggcgctgcagcaggcgctgtccgacggcaacgacgcggcg
atcgtctgcttcgtgttcgacctgctgcatctggacggccgcgcgctgcaggccgtgccg
ctcgaggcgcgccgcgagcggctcgccgcgctgctggcggattccgattccggctgcctg
cggttctcgccgacgctcgacggcccgccggcggcgctgctcgaggccgccgcgcaagcc
ggactcgaaggcctgatcggcaagcgcgccgacggcgcctaccgcgccggacgcggcagc
caatggatcaagctcaaatgccggcagcgccaggagttcgtgatcggcggctacagcgcc
ccgcgcggcagccgcagccacttcggcgcgctgctgctcggcgtccacgcggcgccggac
ggcgcgcggcggcatggccgccacggcgcgcgcgagccgcgcgccctgcagtacgtcggc
cgtgtcggcaccggcttcgacgccaggcagctcgccgcgctcgcgaagcggctcgcggcg
ctcgaatgcgaacgcgcgccgttcgccgtgccgccgccttcacgcggcgacgcggtacgc
tgggtcgagccgacgctcgtcgccgaatgcgagttcgcgggctggaccgccgacgggctg
gtgcggcaggcggcgttcgtcgcgctgcgcgacgacaagccggccgcgcgcatcgtcagg
gaaaccgccgtgccgacggcagggcaaaccacgggaaccaggatggccacgaccgaaccc
gtcacggccggcaacgccaggcgcggccatcgcgccggggcgaacgagccgacgaaggca
acgaaggcaacgaaggcaacgaaggcaacgaaggcaacgaaagccgcggactcgaccgtg
gcgggcgtgcgcatcacgcatccggagcgcatggtcgatccggacggcggctttcgcaag
atcgacgtggtgcgctactacgcgtcggtcgcgcgctggctgctgccgcaactgagcggg
cggcccgtgtcgctggtgcgctacatgaagggcgtcggcggcgaatcgttcttccagaag
cacgcgggcgagcgcggcatgggcttcgtcacgcgccacccggggctcgatcccggccac
gacgcgctgatgacgctcgacgacaccgccgcgctggtgggcgccgcgcagttcgacgcg
ctcgaattccacacctggaacgcgacggtggaccggatcgagcggcccgagcgcctggtg
ttcgacctcgatcccgatccggcgctgccgtgggagcggatgatcgaggcggccggcctg
gtgcgcgcgctgctcgacgcactcgggctgcccgcgttctgcaagaccagcggcggcaag
gggctgcacctggtggtgccgatcacgcggcatacggaatgggacgacgcgaaggcgttc
tcgcaggcggtggcgcggcatctggccgggcagctgccggaccgcttcaccgcgaagatg
gggccggagaaccgcaagggcctgatcttcgtcgactacctgcgcaacgggcgcggtgcg
agcacggtagccgcctattcggcgcgcgcgcggcccgggatgggcgtatcggtgccgctc
acctgggaggaggtggccgccaccacgggcggtgcgcagtggacgatcgccaacctgccg
gcgcggctcgacacgcagcgggccgacccgtgggaggattacgatgccgcgcgcacgcgc
atcacggcggcgatgcgccggcgcctcggcaagctctga
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