Brachyspira pilosicoli 95/1000: BP951000_0780
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Entry
BP951000_0780 CDS
T01278
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
bpo
Brachyspira pilosicoli 95/1000
Pathway
bpo03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
bpo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
BP951000_0780 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bpo03400
]
BP951000_0780 (mfd)
Enzymes [BR:
bpo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
BP951000_0780 (mfd)
DNA repair and recombination proteins [BR:
bpo03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
BP951000_0780 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
Helicase_C
TRCF
CarD_TRCF_RID
RecG_dom3_C
Fer4_20
Motif
Other DBs
NCBI-ProteinID:
ADK30778
UniProt:
D8ICA5
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All DBs
Position
866844..870434
Genome browser
AA seq
1196 aa
AA seq
DB search
MENTEISNLLIEKFINSEEYKSFDLNTVKNIYGIKGGGDSLFFAALFKDKNKSLMIIKDD
ENEAMLLSQALNFYNIENYYFPDYDSVPFTKMSPITDIVQDRLSILYKLINEDKFILITT
IKAISRKLPNKETLKNNTINIKVNDKLNIDSLRLNLYDLGYVIEREVSEVGTCAVRGSII
DIYSILYNNPIRIELFDDEVESIRFFDIEDGKSYKNVEEITIYPVREAIYKDSLVEEFLN
NDSELKDDIQKSKYFAGSENLLGVFNKDLQTIFDYTNENIIFTDDILKLKNKLINVLSTT
EENFNDIDNIFKSFYDNINSLYIDTNYFEEIAKNTINLSPFIVDNNIHKFSFEEGVSFKS
KLTEFLDYIKDYRKKDYFIILSTSHYDQAKRFYKIMDNLEPKLIASEENDNNEESKIAEE
NNIIDSEEKLDFSNNKNNFYIITTQSASGFIKDDIKTIFIADWEVFGRKRKRVKKIPKVN
KNIIETFVDLNIGDYAVHVNYGIGKYLGLTRKLSNGKEKDYLTLEYAKGDKLYIPVEQMN
FVQKYISGSGEEPKLTALGGSAWDKIKSKAREDALATARDLIKIYAIRSNVHGNIYGPDT
QWQDDFEASFNYEETVDQLRAINDIKSDMESDKMMDRLVCGDVGFGKTEVAFRAIFKAVM
AGKQCAILCPTTILSQQHYNNAKKRFEDFPVRIEVLNRFISSRQAKKNKEMLANGSCDII
IGTHMLLSDDIKFKNLGLIVIDEEQRFGVKHKEALKKLRFETDVLTLSATPIPRTLNMAL
TGIRDISIIETPPLNRIPVKTYVMEFNEKTVVNAIERELKRNGQVFYLYNRIDTIESFAL
MIKKLCPKASICVAHGRMTGIQLEKIMSDFINHKYDILVSTTIIENGIDIPNANTILIDS
ANKLGLSELYQLRGRVGRSDREAYAYMFYPENLALTEVAYKRLQAISEHTDLGAGFKIAM
RDLEIRGAGNILGKEQSGMIYQVGYELYTQMLEEATNEYKGEIKEVTFDTVIDFKHNLFI
PDEYISDPKEKISVYKLIMRSQSDEDIDTAKEYMIDKYGKMPKEMEDIFSIAKLKVILKR
VRVLSVIEGHYNMYIKLDKYSKIDAKKVSKLVSLEGSGVYFDKENLNQLIIPVVDDSLIW
KINKVSEVILEIESEEENKDKSKEKSLADANIESQRKNKQNNIRKRKIIKINKREN
NT seq
3591 nt
NT seq
+upstream
nt +downstream
nt
atggaaaatactgaaatatcaaatctcttaatagaaaaatttataaacagcgaagaatat
aaatcttttgatttaaacactgtaaaaaatatatatggcataaaaggcggaggagattct
cttttttttgctgctctttttaaagataaaaataaaagtttaatgattataaaagacgat
gaaaatgaagctatgctattaagtcaggctttaaacttttataatattgagaattattat
tttccagattatgacagtgtaccttttactaaaatgtctcctattacagatatagtgcaa
gacagattaagtattttatataaactaattaatgaagataaatttattttaataacaaca
ataaaagctatttcaagaaaacttccaaacaaagaaacattaaaaaataatacaattaat
ataaaagttaatgataaattaaatattgattctttgaggctcaatttatatgatttagga
tatgtgatagagagagaagtttctgaggttggaacttgtgctgttaggggcagtataata
gatatatattctattctttataataatcctattagaatagagttgtttgatgatgaagtt
gaaagtataagattttttgatatagaagatggaaagtcatataaaaacgttgaagagatt
acaatatatcctgtaagagaagctatttacaaagattcacttgtagaagagtttttaaat
aatgatagtgagttaaaagatgatatacaaaaaagtaaatattttgctggaagtgaaaac
ttacttggagtatttaataaagatttacaaacaatatttgattatactaatgaaaatatt
atatttacagatgatatattaaaactaaaaaataaacttataaatgttttatcaacgaca
gaagagaattttaatgatatagacaatatatttaaatctttttatgataatataaactct
ctttatatagatacaaattattttgaagagatagcaaaaaatacaattaatttaagccct
tttatagtggataataatattcataaatttagttttgaagaaggagtttcttttaaatca
aaactaacagagtttttggattatattaaagattatagaaagaaagattattttattata
ctctctacaagccattatgaccaggcaaaaagattctataaaataatggataatttagag
ccaaaattaattgcatcagaagaaaatgataataatgaagagagtaaaatagcagaagaa
aataatataatagatagcgaagaaaagcttgatttctctaataataaaaataacttctat
ataataacaactcaatctgcatcaggatttattaaagatgatataaaaacaatatttata
gcagactgggaagtatttggaagaaaaagaaaaagagtaaaaaagatacctaaagtaaat
aaaaatataatagaaacatttgttgatttgaatataggcgactatgctgttcatgtaaac
tatggtataggtaaatatttaggattaacccgcaaattatcaaacggaaaagaaaaagac
tatctaacattagagtatgccaaaggagataaactctatataccagtagaacagatgaac
tttgtgcagaaatatatatctggaagcggagaagagccaaaattaacagcattaggcgga
agtgcttgggataaaataaaaagtaaggcaagagaagatgctttagctacagcaagagac
cttataaaaatatatgcaattcgctctaatgtgcatggaaatatttatggaccagacact
caatggcaagatgacttcgaagcttcatttaactatgaggaaactgttgatcaattaaga
gctatcaatgatataaagtcagacatggaaagcgacaagatgatggacaggcttgtttgc
ggagatgtaggatttggaaagactgaggttgcttttagagctatatttaaagctgttatg
gctggtaaacaatgtgcaatactctgccctactacaatactctctcaacagcactataat
aatgccaaaaaaagatttgaagatttccctgttcgtatagaagtattaaatagatttatc
tcatcaagacaggctaagaaaaataaagaaatgttagcaaatggttcttgcgatatcatc
ataggtacgcatatgcttttatctgatgatattaagtttaaaaacttaggtttaatagtg
atagatgaagagcagagatttggtgtaaaacataaagaagcattaaaaaaacttagattt
gaaactgatgtgcttacactatctgcaacaccaataccaagaacattaaatatggcatta
acaggcataagagatataagcataatagaaacgcctccattaaacagaatacctgtaaaa
acttatgtaatggagtttaacgaaaagactgttgtaaatgcaatagagagagaattaaaa
agaaacggccaagtattttatttgtataacagaatagatactatagaatcatttgctttg
atgataaaaaaactatgcccaaaagcttcaatatgtgtagcacatggaagaatgacaggt
attcagttagagaaaattatgtcggattttattaatcataaatatgacatattagtatct
acaacaataatagaaaatggaattgatatacctaatgcaaacactatattaatagatagt
gctaataaactaggtctttctgaactttatcaattaagaggaagagttggaaggagcgac
agagaggcttatgcttatatgttttatcctgaaaacttagcattaacagaagtagcttat
aaaagacttcaagccatatcagaacatacagatttaggtgctggttttaagatagcaatg
agggacttggaaataagaggagctggcaatatattaggaaaagaacaatctggtatgatt
tatcaagttggttatgagctttatactcaaatgcttgaagaggctaccaatgaatataag
ggtgaaataaaagaagttacttttgatacggttatagattttaaacataatttgtttata
ccagatgaatatatatcagacccaaaagagaaaatatcagtatataaattaataatgcgt
tctcaaagtgatgaagacattgacactgccaaagaatatatgatagataaatatggaaaa
atgcctaaagaaatggaagatatatttagtatagcaaaattgaaagtgatactaaaaaga
gtgagagtattatcagtgatagaaggacattataatatgtatataaaacttgataaatac
tctaaaatagatgctaagaaagtttcaaaattagtttctttagaaggttctggagtttat
tttgataaagagaatctcaatcaattaataataccagtagtagatgatagtttaatttgg
aaaataaataaggtaagtgaagtaatattagaaatagaaagcgaagaagaaaataaagac
aaaagcaaagaaaaaagtttggcagatgctaatatagaatcccaaagaaaaaataagcaa
aataatataagaaaaagaaaaataataaaaattaataaaagagagaattaa
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