Brevundimonas pondensis: IFE19_15690
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Entry
IFE19_15690 CDS
T07639
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
bpon
Brevundimonas pondensis
Pathway
bpon03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
bpon00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
IFE19_15690 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bpon03400
]
IFE19_15690 (ligD)
Enzymes [BR:
bpon01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
IFE19_15690 (ligD)
DNA repair and recombination proteins [BR:
bpon03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
IFE19_15690 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
QTC87505
LinkDB
All DBs
Position
3183125..3185644
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AA seq
839 aa
AA seq
DB search
MAARGELDTYQAMRNFGVTPEPKGRKAKTRQTRLRYLIQRHAASHLHYDFRIEHDGVLKS
WAVTKAPSRDPHVKRLAVEVEDHPLDYGGFEGTIPAGNYGAGTVQLWDVGEWAPQDADLD
AAFRKGVVKLTLDGERLKGGWALIRLKSDRGKPSKRPNWLLLKEKDAYAVEGEGDALAEI
DASVISGRSLAEIAAGPAEWTSSKPAARKAARPPPQPAAKPLAKPHAFVPIQLCQIAARP
PSATGWAHEIKFDGYRIQIATGGGRAILRTRKGLDWTDRFPELAADAARWPDGVLDGELC
ALDERHMPDFSALQTAISEGATDSLVYFAFDLLFDGPEDLRKLPLSHRKARLQALIDRAP
RVAAERLRYVEHFSASGQTILESACRMNLEGVISKKLDAPYQAGRAAAWVKSKCRGRDEV
VIGGWSSEGGSRFRSLLVGVQTKGGLRYLGRVGTGYSAALTKRLTAALKAAAADRSPFIG
ANIPEDGNDIHWTTPALVAEIEHGGYTEAGSLRQAAFKGLREDKAPSDVTDAPQPPAATS
SKLIVAGVTITHPDKIMWPALDDHVAVTKADLIAYYEAAAERLLPHILDRPVSIIRAPDG
IGGERFFQRHALTSRVPGLRPIDVGEGRPYLAVIDLGGLIAVGQSGGLELHPWGCKPGDP
ETPDQITFDLDPDEGLAFDDVVAAANLLKPRLEALGLTPFVKTTGGKGLHVVVPIKADAR
SRVEWDTAKAFAKGVSEAMKADHPDRFTTTLAKKARGGKIFLDYLRNGRMATAVAPWSPR
ARPGAGIAFPLRWDQVKPGLEPTAFNLWSAAELLQTSDPWLDFRSAAASLKPALKQLKL
NT seq
2520 nt
NT seq
+upstream
nt +downstream
nt
atggcggcgcgcggcgaactcgacacctatcaggccatgcggaacttcggcgtcacgccg
gagcccaagggccgcaaggcgaaaacccgtcagacccgcctgcgctacctgatccagcgc
cacgccgcgtcgcacctgcactacgacttccgcatcgagcacgacggggtcctcaagtcc
tgggccgtgaccaaggccccctcgcgcgacccccatgtcaaacgtctggcggtcgaggtc
gaggaccatccgctcgactacggcggcttcgaggggaccatcccggcggggaactatggc
gcgggcacggtgcagttgtgggacgtcggcgaatgggcgcctcaggacgcggatctggac
gcggccttcaggaagggcgtggtcaagctgaccctcgacggcgagcggttgaagggcggc
tgggccctgatccggctcaagtccgaccgagggaaaccctccaaacgccccaactggctg
ctgctcaaggagaaggacgcctatgccgtcgagggcgaaggcgacgccctggccgagatc
gacgcctcggtgatcagcgggcgcagcctggctgaaatcgccgctggccccgccgaatgg
acatcgtccaaacccgccgcccgcaaggctgcgcgcccgccgccacagccggcagccaaa
ccgctggccaaaccccacgccttcgtccccatccagctgtgccagatcgccgcccgaccg
ccctcggccaccggctgggcgcacgagatcaagttcgacggctaccggattcagatcgcg
accggcggcggccgcgcgatcttgcgcacccgcaagggtctggactggactgaccgcttt
cccgaactggccgccgacgccgcccgctggcccgacggcgtgctggacggcgagctgtgc
gccctggacgagcgtcacatgccggacttctcggccctgcagacggccatctcggagggc
gcgaccgacagcctggtctatttcgccttcgacctgctgttcgacgggcccgaggacctg
cgcaaactgccgttgtcgcaccgcaaggcccggcttcaggccctgatcgatcgcgccccc
agggtcgccgccgagcgcctgcgctacgtcgagcatttcagcgccagcggccagaccatt
ctggaaagcgcctgccgcatgaatctagagggcgtcatctccaagaagctcgacgccccc
tatcaggcgggccgcgcggccgcctgggtcaagtccaagtgccgggggcgcgacgaggtg
gtgatcggcggctggtcgtccgagggtggcagccgcttccgctccctgctggtcggggtt
cagacgaagggcgggctgcggtatctgggccgcgtcggcacgggctattcggcagccttg
accaaacgcctgacagcggcgctgaaagccgccgccgccgaccgctcccccttcatcggc
gccaatatccccgaggacgggaatgacatccactggaccaccccggccctggtcgccgag
atcgaacacggcggctacaccgaggcggggtcgttgcgtcaggccgccttcaagggcctg
cgcgaggacaaggcgccgtccgacgtgaccgacgcgccccaaccgcccgccgccacgtcc
agcaaactgatcgtcgcgggcgtcaccatcacccatcccgacaagatcatgtggcccgcg
ctcgacgaccacgtcgctgtcaccaaggccgacctgatcgcctattacgaagccgccgcc
gagcgcctcctgccccacatcctcgaccgtcccgtctccatcatccgcgcccccgacggc
atcggcggcgagcgcttcttccagcgccacgccctgacgagccgcgtcccgggcctgcgg
ccgatcgacgtcggcgagggcaggccctacctcgccgtcatcgacctcggcggcctgatc
gccgtcggccagtcgggtggtctggagttgcatccctggggctgcaagcccggcgatccc
gagaccccggaccagatcaccttcgacctcgaccccgacgagggcctcgccttcgatgac
gtcgtcgccgccgccaacctgctgaaaccgcggctcgaggccctcggcctgacccccttc
gtcaaaaccaccggcggcaagggtctgcacgtcgtcgtcccaatcaaggccgacgcccgc
agccgggtggaatgggacacggccaaggccttcgccaagggagtctcggaggcgatgaag
gccgaccatcccgatcgcttcaccaccaccctggccaagaaggcgcgtggcggaaaaatc
ttcctcgactatctgcgcaacggtcgcatggccaccgccgtcgccccctggtcgccgcgc
gcccgccccggcgcggggatcgccttccccctgaggtgggaccaggtgaagccggggctg
gaaccgacagccttcaacctatggagcgccgccgaactgttgcagacgtccgatccatgg
ctggatttccgttcggccgccgcgtctttgaaaccggcgctgaaacagctgaagctctaa
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