Burkholderia pseudomallei BPC006: BPC006_I2448
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Entry
BPC006_I2448 CDS
T02301
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
bpq
Burkholderia pseudomallei BPC006
Pathway
bpq03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
bpq00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
BPC006_I2448
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bpq03400
]
BPC006_I2448
Enzymes [BR:
bpq01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
BPC006_I2448
DNA repair and recombination proteins [BR:
bpq03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
BPC006_I2448
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
MFD_D3
CarD_TRCF_RID
ResIII
UB2H
Glyco_tran_WecG
ERCC3_RAD25_C
SNF2-rel_dom
Motif
Other DBs
NCBI-ProteinID:
AFR16315
LinkDB
All DBs
Position
I:2395701..2399270
Genome browser
AA seq
1189 aa
AA seq
DB search
MKSKDGFYNTSFAAMRRAELVRHPAFANQPLVMSDNASPSQSPVALVKAGQRFAFDGAHG
SADALVIARYLAAHRAQVPLLAVICANAVDAQRLAQELAYFAPDARVRVLPDWETLPYDT
FSPHQDLVSERLATLHDLGEGRCDILLVPATTALYRMPPASFLAAYTFSFTQGERLDEAK
LKAQLTLAGYEHVSQVVRPGEYCVRGSLIDLFPMGSPLPYRIDLFDDQVDSIRAFDPDTQ
RSLYPVRDVRLLPGREFPFDEAARTAFRSRWRETFEGDPSRAPIYKDIGNGVPSAGIEYY
LPLFFDETATLFHYLPERAQLVFTGDLDAAIKRFTADTKQRYAFLSHDRERPILEPQRLF
LSDDDFYLLAKPFARIVLPAQPSGGWAAPLPNLALERHADAPLAAFAAYLETTKNRVLFT
VESAGRRETIAQLFAEHHLRPAGSDSFAAWLASDERFALGVAPLANGFAVPGEGYAIVTE
TELYGALGRRAGRRRQEQASNVDAMVRDLSELKVGDPVVHAQHGIGRYMGLVSMDLGEGD
TEFLHLEYAGDSKLYVPVAQLHVISRYSGADPDSAPLHALGSGQWERAKRRAAQQIRDTA
AELLNLYARRAAREGHAFGLDPRDYVKFADSFGFEETPDQAAAIAAVIGDMTSGKPMDRL
VCGDVGFGKTEVALRAAFIAVMGGKQVALLSPTTLLAEQHTQTFADRFADWPVRIVELSR
FKTAKEVNAAIAQINEGSVDIVIGTHKLLSSDVQFKRLGLVIIDEEHRFGVRQKEALKAL
RAEVDVLTLTATPIPRTLGMALEGLRDFSVIATAPQKRLAIKTFVRREEESVIREAMLRE
LKRGGQVYFLHNEVETIENRKAMLEELVPEARIVIAHGQMHERELERVMRDFVAQRANVL
LCTTIIETGIDVPSANTIIMHRADKFGLAQLHQLRGRVGRSHHQAYAYLLVHDPQALTKQ
AQRRLEAIQQMEELGSGFYLAMHDLEIRGTGEVLGDKQSGEIHEIGFQLYTEMLNDAVKA
LKNGKEPDLTAPLAATTEINLHAPAILPADYCGDVQERLSLYKRLANCEHGDAIDGIQEE
LIDRFGKLPPQAHALVETHRLRLAAKPLGIVKIDASEAAIGLQFVPNPPIDPMRIIDMVQ
KHRHIKLAGQDKLRIETRTPDLAVRVSTVKETLRALGQPQQPRAQAAAR
NT seq
3570 nt
NT seq
+upstream
nt +downstream
nt
atgaaatcgaaggacggattttataatacgtctttcgccgcgatgcgccgcgccgagctc
gtccgccatccggcgttcgccaaccagccgctcgttatgtcagacaacgcctccccttcg
cagtcccccgtcgcgctcgtcaaggcgggccagcgcttcgccttcgacggcgcacacggc
tccgccgacgcgctcgtcatcgcccgctatctcgccgcgcaccgcgcgcaggtgccgctt
ctcgccgtgatctgcgcgaacgcggtcgacgcgcaacggctcgcgcaggagctcgcctac
ttcgcgcccgacgcgcgcgtgcgcgtgctgcccgactgggagacgctgccgtacgatacg
ttctcgccgcaccaggatctcgtgtccgagcggctcgcgacgctgcacgacctcggcgaa
ggccgctgcgacatcctgctcgtgcccgcgacgacggcgctctaccggatgccgcccgcg
tcgttcctcgccgcgtacacgttctcgttcacgcagggcgagcggctcgacgaagcgaag
ctgaaggcgcagctgacgctcgccggctacgagcacgtgagccaggtcgtgcggcccggc
gaatactgcgtgcgcggctcgctgatcgacctgttcccgatgggctcgccgctgccgtac
cggatcgatctgttcgacgatcaggtcgactcgatccgcgcgttcgatccggacacgcag
cgcagcctctacccggtgcgcgacgtgcgcctgctgcccggccgcgaattcccgttcgac
gaggccgcgcgcaccgcgttccgaagccgctggcgcgagacgttcgagggcgacccgagc
cgcgcgccgatctacaaggacatcggcaacggcgtgccgtcggccggcatcgagtattac
ctgccgctcttcttcgacgagacggcgacgctcttccactatctgcccgagcgcgcgcag
ctcgtgttcacgggcgatctcgacgcggcgatcaagcgcttcacggccgacacgaagcag
cgctacgcgttcctgtcgcacgatcgcgagcggccgatcctcgagccgcagcgcctgttc
ctctccgacgacgatttctacctgctcgccaagccgttcgcgcggatcgtgctgcccgcg
cagccgtcgggcggctgggccgcgccgctgccgaatctcgcgctcgagcgccacgcggac
gcgccgctcgccgcgttcgccgcgtatctcgaaacgacgaagaaccgcgtgcttttcacc
gtcgaatcggcgggccgccgcgagacgatcgcgcaactgttcgccgagcaccatctgcgg
ccggcgggcagcgacagcttcgccgcgtggctcgcgagcgacgagcgcttcgcgctcggc
gtcgcgcccctcgcgaacggcttcgcggtgccgggcgagggttacgcgatcgtcaccgag
accgagctgtacggcgcgctcggccgccgcgcgggacgccgccgccaggaacaggcgagc
aacgtcgacgcgatggtgcgcgatctgtccgagctgaaggtgggcgacccggtcgtccat
gcgcagcacgggatcggccgctacatggggctcgtgtcgatggatctcggcgaaggcgac
accgagttcctgcatctcgaatacgcgggcgacagcaagctgtacgtgcccgtcgcgcaa
ctgcacgtgatctcgcgctacagcggcgcggacccggacagcgcgccgctgcacgcgctc
ggctccggccagtgggagcgcgcgaagcgccgcgccgcgcagcagatccgcgatacggcc
gccgagctgctgaacctgtacgcgcgccgcgcggcgcgcgagggccacgcgttcgggctc
gacccgcgcgactacgtgaagttcgccgacagcttcggcttcgaggaaacgccggaccag
gccgcggcgatcgcggccgtgatcggcgacatgacaagcggcaagccgatggaccgcctc
gtgtgcggcgacgtcggcttcggcaagaccgaggtcgcgctgcgcgcggcattcatcgcg
gtgatgggcggcaagcaggtcgcgctgctctcgccgaccacgctgctcgccgagcagcac
acgcagaccttcgccgaccgcttcgcggactggccggtgcgcatcgtcgagctgtcgcgc
ttcaagaccgcgaaggaagtgaatgcggcgatcgcgcagatcaacgaaggcagcgtcgac
atcgtgatcggcacgcacaagctgctgtcgtcggacgtgcagttcaagcgcctcggcctc
gtgatcatcgacgaggagcaccgcttcggcgtgcgccagaaggaagcgctgaaggcgctg
cgcgcggaagtggacgtgctcacgctgaccgcgacgccgatcccgcgcacgctcggcatg
gcgctcgaagggctgcgcgatttctcggtgatcgcgaccgcgccgcagaagcggctcgcg
atcaagaccttcgtgcgccgcgaggaagaaagcgtgatccgcgaggcgatgctgcgcgag
ctcaagcgcggcggccaggtgtacttcctgcacaacgaggtcgagacgatcgagaaccgc
aaggcgatgctcgaggagctggtgcccgaggcgcgcatcgtgatcgcgcacggccagatg
cacgagcgcgagctcgaacgcgtgatgcgcgatttcgtcgcgcagcgcgcgaacgtgctg
ctgtgcacgacgatcatcgagaccggcatcgacgtgccgagcgcgaacacgatcatcatg
caccgcgcggacaagttcggcctcgcgcagttgcaccagttgcgcgggcgcgtcggacgc
tcgcaccatcaggcatacgcgtacctgctcgtgcacgatccgcaagcgctgacgaagcag
gcgcagcgccggctcgaggcgatccagcagatggaggagctcggctcgggcttctatctc
gcgatgcacgacctcgagatccgcggcaccggcgaagtgctcggcgacaagcagtcgggc
gagatccacgagatcggcttccagctctacaccgagatgctgaacgatgcggtgaaggcg
ctgaagaacggcaaggagccggacctgaccgcgccgctcgccgcgacgaccgagatcaac
ctgcacgcgcccgcgatcctgcccgccgactattgcggcgacgtgcaggagcggctgtcg
ctgtacaagcggctcgcgaactgcgagcacggcgatgcgatcgacggcatccaggaggag
ctgatcgaccgcttcggcaaactgccgccgcaggcgcacgcgctcgtcgagacgcaccgg
ctgcggctcgccgcgaagccgctcggcatcgtgaagatcgacgcgagcgaagcggcgatc
gggctgcagttcgtgccgaatccgccgatcgatccgatgcggatcatcgacatggtgcag
aagcaccggcacatcaagctcgcgggccaggacaagctgcgcatcgagacgcgcacgccg
gacctcgcggtgcgcgtgtcgacggtgaaggaaacgctgcgcgcgctcggccagccgcag
cagccgcgcgcgcaggcggcggcgcggtag
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