Butyrate-producing bacterium SS3/4: CK3_24620
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Entry
CK3_24620 CDS
T02611
Name
(GenBank) DNA polymerase III catalytic subunit, PolC type
KO
K03763
DNA polymerase III subunit alpha, Gram-positive type [EC:
2.7.7.7
]
Organism
bprs
Butyrate-producing bacterium SS3/4
Pathway
bprs03030
DNA replication
bprs03430
Mismatch repair
bprs03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
bprs00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
CK3_24620
03430 Mismatch repair
CK3_24620
03440 Homologous recombination
CK3_24620
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
bprs03032
]
CK3_24620
03400 DNA repair and recombination proteins [BR:
bprs03400
]
CK3_24620
Enzymes [BR:
bprs01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
CK3_24620
DNA replication proteins [BR:
bprs03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
CK3_24620
DNA repair and recombination proteins [BR:
bprs03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
CK3_24620
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
RNase_T
PHP
DNA_pol3_finger
tRNA_anti-codon
Rv2179c-like
RNase_H_2
DEDDh_C
Motif
Other DBs
NCBI-ProteinID:
CBL42014
UniProt:
D7GW22
LinkDB
All DBs
Position
2529509..2533639
Genome browser
AA seq
1376 aa
AA seq
DB search
MTIEDNLIYRERSKEVGRVLEKIFTERCGLAAEVEFLYKESEKKDPMDQPVFMKPGGELV
LGVQSEENYLEGAAESAPWDERTSNGGFNGTFGDGNGNADVQMAAQSAAGSGASGARSGP
DPGKAASGKSGSGTKTSAGFGAAKQKTDAAGKGGGNQAGKSAGGGQNGNGGGFTKKTFGE
KGKGGFSGGFRKGSDGRIPYRKSENPDVLFGRDFEGDAVNIHDIDGEIGEVVIRGKVIRA
EKRELRSGNKLMIFDLTDFTDSITVKMFLREGQEEDATAAIKEGNFIKIKGITTIDKFDG
ELTIGSIVGIKKSEDFTSKRVDNAPVKRVELHCHTKMSDMDGVSEVKDLVKRAKKWGMPA
LAITDHGCVQAFPDANHALDKGDTFKVLYGVEGYLVDDMKEMVVNSRNQSLDGDYVVFDI
ETTGFSPIKNKIIEIGAVKVRNGEIIDRMDEFVNPEVPIPFDIERLTGINDAMVMGADTV
DKVLPRFLEFVGDAALVAHNASFDVSFISHNAGLLGLSFDPTVLDTVTLARALLPNLNRF
KLDTVAKALGVSLENHHRAVDDAEATAGIFLKFVEMLKKQHDMTNLDQLEEFSHVSDETI
MKMPTYHVIILAKNDLGRVNLYRLVSWSHLKYFSRRPRIPKSVLNQYREGLIIGSACEAG
ELYQAILRGVPDAELAKLVKFYDYLEIQPLGNDMFMLRDEKSTVRTVDDLMDINRKIVSL
GEQFNKPVCATCDVHFMDPDDAIYRKILMSGMGFKDADEQAPLFLRTTEEMLAEFEYLGS
DKCYEVVVTNTRMIADMCEPIAPVRPDKCPPVIDKSDETLRNICYNRAHEMYGENLPKIV
VDRLERELHSIISNGFAVMYIIAQKLVWKSNEDGYLVGSRGSVGSSFVATMSGITEVNPL
SPHYYCPNCHYYDFDSEEVKKYGGMAGCDMPDKVCPECGHPMVKDGFDIPFETFLGFKGD
KEPDIDLNFSGEYQSRAHDYTEVIFGKGQTFRAGTIGTLADKTAYGYVKNYFEEHGERKR
NCEINRIVQGCVGVRRTTGQHPGGIVVLPLGEMIYSFTPVQHPANDMTTKTITTHFDYHS
IDHNLLKLDILGHDDPTMIRMLQDLTGLDPVKDIPLDSREVMSLFQSTDALGIKPEDIGG
CKLGALGVPEFGTDFAMQMLIDTKPKYFSDLVRIAGLAHGTDVWLGNAQTLIQEGKATIQ
TAICTRDDIMIYLIQQGLEEGLAFTIMEAVRKGKGLKPEWEEEMTKHGVPDWYIWSCKKI
KYMFPKAHAAAYVMMAWRIAYCKVFYPLAYYAAFFSIRASAFSYEIMCLGREKLEYHLAD
YKKRADTLSKKEQDTLRDMRIVQEMYARGFDFLPLDIYTAKARHFQVVGGQVDAFH
NT seq
4131 nt
NT seq
+upstream
nt +downstream
nt
atgaccatcgaggacaatctgatctacagggagcggtctaaggaagtcggacgggtactg
gaaaagatcttcacggagcgctgcgggcttgcggctgaggtagaatttttatataaagag
agtgaaaagaaagacccgatggaccagccggtattcatgaagccgggaggagaactcgtt
ttaggtgtacagagtgaggagaattacttagaaggtgcagcggagagtgccccctgggat
gaaagaacgtcaaacggcggatttaacgggacattcggggatggaaatggaaacgcggat
gttcagatggcagctcaaagtgcggccggttctggagcttccggcgccagatccggcccg
gatccgggaaaggcagccagtggaaagagcggttccggcacaaagacatcggccggtttt
ggagctgcaaagcagaagacggacgcggctggaaagggcggcggaaaccaggctggaaag
tccgcgggaggaggacagaacgggaacggcggcggattcacgaagaagaccttcggcgag
aaggggaaaggcggattctccggcggcttccggaaaggttccgatggaaggattccgtac
cgaaagtcggaaaatccggacgttcttttcgggcgcgattttgagggcgatgcggtgaat
atccatgacatcgacggtgagatcggcgaggtcgtgatccgcggaaaggtgatccgcgcg
gagaagcgggaactccggagcggaaacaagctcatgatcttcgatcttacagactttaca
gacagtattactgtaaagatgttcttaagagaagggcaggaggaggatgccactgcggct
atcaaggaaggaaacttcatcaagatcaagggaatcaccaccattgataagttcgacggc
gagctgactatcggttccatcgtgggcattaagaagagtgaggactttacctccaagcgt
gtggataatgccccggtgaagcgagtggagctccactgccatacgaagatgagcgatatg
gatggcgtttccgaggtaaaggacctggtaaagcgggcgaagaagtggggaatgccggcc
ctggcgatcacagaccacggctgtgtccaggcgttcccggacgcgaaccatgcccttgac
aaaggggatacttttaaggtcctctacggtgtcgagggatatctggtggacgacatgaag
gagatggtcgtcaattccagaaatcagagtctcgatggggactatgtggtgttcgatatc
gagaccacgggattctcgccgataaagaataagatcatcgagattggtgccgtgaaggtg
agaaatggcgagatcatcgacaggatggatgagtttgtgaatccggaggttccgatcccc
ttcgatatcgagcgtctgacagggatcaacgatgccatggtcatgggggcagatacggtg
gacaaggtgctgccgagattcctcgagtttgtgggggatgcggcactggttgcccacaac
gcgtccttcgatgtgagctttatctcccacaatgcgggtcttttgggactgtcctttgat
ccgacagtcctggatacggtgactctggcgagagcacttcttccgaacctgaaccggttt
aagctggatacggtggcgaaggcactgggtgtttccctggagaatcatcaccgggccgtg
gacgatgcggaggcaactgcgggaattttcctgaaattcgtggaaatgttaaaaaaacag
cacgatatgacaaatctcgaccagctggaggagttcagccacgtgagcgatgagacgatc
atgaagatgccgacgtaccatgtcatcattctcgcaaagaatgacctgggacgcgtgaat
ctgtatcgtcttgtctcatggtcccaccttaaatatttctcgagaagaccgagaattccg
aagagcgtgctgaaccagtacagagagggcctgatcattggatcagcctgcgaggcggga
gagctataccaggcgatcctgcgcggtgtgccggatgcggagcttgcgaagctcgtgaag
ttttatgactatctggagatccagcctctcggaaacgacatgtttatgctgagagatgag
aagagcacggtgaggacggtggatgacctgatggacatcaaccggaagatcgtgtccctc
ggtgagcagtttaataagccggtctgcgctacctgcgatgtgcattttatggatccggat
gacgcgatctatcggaagatcctgatgtccggaatgggatttaaggatgcggatgagcag
gctccgttgttcttgcggacaacggaagaaatgctcgcggagtttgagtatctgggaagc
gacaagtgttatgaggtcgttgtcacaaatacgagaatgatcgcggacatgtgcgaaccg
atcgcgccggtgcggccggataagtgtccgccggtcatcgacaagtctgatgagacgctg
cgaaatatctgttacaaccgcgcccatgagatgtacggcgagaacctgccgaagatcgtt
gtagaccgtctggagcgggaactgcattccattatctccaacggattcgcggtcatgtac
atcattgcgcagaaattagtatggaaatccaacgaggacgggtatctggttggttcccga
ggatccgtaggttcgtccttcgttgccaccatgtccggtatcacggaggtcaacccgtta
agcccgcattattattgtccgaattgtcattattatgattttgactcggaggaggtaaaa
aagtacggcggtatggcgggatgtgatatgccggataaggtgtgtccagagtgcggacat
ccgatggtgaaggacgggtttgatattccgttcgagacgttccttggattcaagggagat
aaggagccggatatcgacttaaacttctctggtgaataccagagccgcgcccatgattac
acggaggttatcttcggtaaaggacagacgttccgtgcgggtaccatcggtactctggca
gataagacggcctacggatatgtgaagaattattttgaggagcatggagagagaaagaga
aattgtgagatcaaccggatcgttcagggatgtgtcggcgtacggcggacaacgggacag
catccgggaggtatcgttgttctgccgctcggcgagatgatctattcgtttaccccggta
cagcatccggcgaatgatatgacgacgaagacgatcacgacgcatttcgattaccactcc
atcgaccacaacctgttgaagcttgatattctcggacacgatgatccgacgatgatccgt
atgctgcaggatctcacaggactggatccggttaaggatattccgttggattccagggag
gtcatgagtctgttccagagtacggacgcgctggggatcaagccggaggacatcggcggg
tgcaagcttggggcgcttggcgttccggagtttggtacggatttcgcaatgcagatgctt
attgatacgaagccgaagtatttttcggaccttgtgcgtattgcgggccttgcccatggt
acggatgtgtggctggggaacgcccagacgcttatccaggaggggaaggcaacgattcag
acggcgatctgtacgcgtgatgatatcatgatctatctgatccagcaggggcttgaggaa
ggtcttgcgtttacgatcatggaggcggttcgtaagggcaaaggcttaaagcctgagtgg
gaagaggagatgacgaagcatggggtgccggactggtatatctggtcatgtaagaagatc
aagtatatgttcccgaaggctcatgcagcggcgtatgttatgatggcatggcgtattgct
tattgtaaggtgttttatccgttggcgtattatgcggcgttttttagtattcgtgcaagt
gcgttttcttatgagatcatgtgtttggggcgtgagaaattggaatatcacttggcggat
tataagaagagggcggatacactttcgaagaaggagcaggatacgttgcgggatatgagg
atcgtgcaggagatgtacgcccgtgggtttgattttctgccactggatatttatacggcg
aaggccagacattttcaggttgtgggaggacaagttgatgccttccattaa
DBGET
integrated database retrieval system
