Burkholderia pseudomallei NAU35A-3: BBU_3781
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Entry
BBU_3781 CDS
T03476
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
bpsa
Burkholderia pseudomallei NAU35A-3
Pathway
bpsa03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
bpsa00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
BBU_3781 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bpsa03400
]
BBU_3781 (ligD)
Enzymes [BR:
bpsa01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
BBU_3781 (ligD)
DNA repair and recombination proteins [BR:
bpsa03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
BBU_3781 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
AIS91564
LinkDB
All DBs
Position
2:458814..462263
Genome browser
AA seq
1149 aa
AA seq
DB search
MAGKLSVYRSRRRFGETPEPEGARRSPRRTKGAGRAGDESKRRARGDAAASSRGERAARR
GRAQQPAPARARGRSALHYVIQEHHARRLHYDFRLELDGTLKSWAIPKGPSLDPSVKRLA
VHVEDHPLEYAAFEGEIPEGHYGAGSVIVWDRGAWTPVGGVAAARAGYRAGKLSFTLDGD
KLHGGWALVRGRGLRDSGGKHEQWLLIKERDGDARDEADYDVLRARPGSVLGGARSARAR
RGRAAEPTERDAAAPKRARASVPKGRAEAKTSGRAPRTVSNGTAGAGKGASKRASKREGT
NTGNGARSGKGSGKGAGEGVATSRRKRAAAPQSSDVDSADTDSPAARGLALPAGLAARFG
LSGAKRAALPRTLRPQLATLVDTPPPGKDWLYEAKFDGYRVLIRIDRGAASRPIAVYTRE
GLDWSAKFAAQLDALARLPVDRGWLDGEAVVLDRAGVPDFQALQNALGAGRSNDVTLFLF
DVPFLNGFDLRGVPLERRRALLAALVAAHASDVLRYSESLAFEAADLLTGACDAGLEGLI
GKRRDGRYVEGRSRSWIKLKCRRRQEFVIGGYTEPAGRRSGFGALLLGVYARAPGDEGDE
GDEGDEGERRTRGAAETRDERRRASHASRTSRTSRAPDAGAARAPQARPLALRYVGRVGT
GFGERTLRALARTLHEHETGRMPFADVPRERSGTPVHWVKPVLVAECEFAEWTGDGIVRQ
ASFVGLREDKPARTIVREQPQSMETEAMNEHADEHTDEHTDARAERRTGGRTRRKARDGG
ARDAPPLARHPKRGDAGSSPSSSPSSSTSTSPSISASGRTRGGGRSASRDRAGDADEGAN
EDANDHAPRERAGAPKVAGVRVSHPGRVIDPHTGTRKLDLVEYWEWIAPWLLPHLKGRPV
SLVRAPADIGGELFFQKHADKLEIPNVALHAGLDPGHEALITIDDVKGLVGAAQMGTIEL
HTWNAHVSNIEKPDRAVFDLDPDPSLDWRAVIEAAQLTRALLDELGLVSFCKTSGGKGLH
VVVPLARHAGWDDVKAFAHAVARHMAATLPERFTATMGPRNRKGKIFVDYLRNNRGASTI
AAYSVRARLGLGVSVPIAWDELPDTTGAAQWTLANLHERLDALKHDPWRAYAHVRQRVTA
ALRKRLSDG
NT seq
3450 nt
NT seq
+upstream
nt +downstream
nt
atggcgggaaaactcagcgtgtaccgcagcaggcggcgcttcggcgaaacgccggagccc
gagggcgcgcggcggtcgccgcgccgcacgaaaggcgcgggccgcgcgggcgacgaatcg
aagcggcgcgcgcgcggcgatgcggcggcgtcgagccgcggcgagcgcgccgctcgccgt
ggccgcgcgcagcagccggcgccggcgcgcgcgcgcggcaggtccgcgcttcattacgtg
atccaggagcatcacgcgcgccgcttgcattacgactttcgtctcgaactcgatggcacg
ctcaaatcgtgggcgatcccgaaagggccgagcctcgatccttcggtcaagcggctcgcg
gtgcacgtcgaggatcatccgctcgaatacgcggcgttcgagggcgagattccggaaggc
cattacggcgcgggctcggtgattgtctgggatcgcggcgcatggacgcccgtcggtggc
gtcgccgccgcgcgcgccggctatcgcgcgggcaagctgagcttcacgctcgacggggac
aagctgcacggcggctgggcgctcgtgcgcggccgcgggctgcgtgacagcggcggcaag
cacgagcaatggctgctgatcaaggaacgcgacggcgacgcgcgcgacgaagcggactac
gacgtgctgcgcgcacggccgggcagcgtgctcggcggcgcgcggtccgcgcgggcgagg
cgcgggcgcgcggccgagccgacggagcgcgacgccgccgcgccgaagcgggcgcgcgct
tcagtgccgaaagggcgcgccgaagcgaagacgagcgggcgtgcgccgcgcaccgtgtcg
aacgggactgcgggcgcgggtaagggcgcaagcaagcgtgcaagcaagcgcgagggcacg
aataccggaaacggcgcgagaagcggcaagggcagcggcaagggcgcgggcgagggcgtg
gccacatcgcgccgcaaacgcgccgccgcgccgcagtcgtccgacgtcgattcggccgat
accgattcacccgcggcgcgcggcctcgcgttgcccgccgggcttgccgcgcgcttcggc
ctgagcggcgcgaagcgcgcggcgctgccgcgcacgttgcggccgcaactggcgacgctc
gtcgacacgccgccgcccggcaaagactggctatacgaagcgaagttcgatggctaccgc
gtgctgatccggatcgatcgcggcgcggcgtcccgcccgattgccgtctacacgcgcgag
gggctcgactggagcgcgaaattcgccgcgcagctcgacgcgctcgcgcgcctgccggtc
gaccggggctggctcgacggcgaggcggtcgtgctcgatcgcgcgggcgtgccggatttc
caggcgctgcagaacgcgctcggcgccggacgctcgaacgatgtcacgctgttcctgttc
gacgtgccgttcctgaacggcttcgacctgcgcggcgtgccgctcgaacggcggcgcgcg
ctgctcgccgcgctcgtcgccgcgcatgcgagcgacgtgctgcgttactcggagagcctc
gcgttcgaggccgccgatctgctgacgggcgcgtgcgacgcggggctcgaagggttgatc
ggcaagcggcgcgatggccggtacgtcgaggggcgctcgagatcgtggatcaagctgaag
tgccggcgcaggcaggagttcgtgattggcggctacacggagccggccggacggcgcagc
ggattcggcgcgttgctgctcggcgtgtacgcccgggcgccgggcgacgagggcgacgag
ggcgacgagggcgacgagggcgaacgaaggacgcgcggcgcggccgaaacgcgcgacgag
cggcgtcgtgcatcccacgcatcccgcacatcccgcacatcccgcgcgcccgatgccggc
gcggcgcgcgcaccgcaggcgcggccgctcgcgttgcgctacgtcggccgcgtcggcacc
ggcttcggcgagcgcacgcttcgcgcgctcgcgcggacgctgcacgagcacgagaccggg
cggatgccgttcgcggacgtgccgcgcgagcgcagcggcacgccggttcactgggtgaaa
cccgtgctcgtcgccgaatgcgaattcgcggaatggacgggcgacggcatcgtccggcag
gcgtcgttcgtcgggctgcgcgaagacaagccggcgcgcacgatcgttcgcgagcaaccg
caatccatggagacggaagccatgaatgaacacgctgacgaacatacggatgaacatacc
gatgcacgcgccgaacgtcgcaccggcggacgcacgcggcgcaaagcacgtgacggcggc
gcgcgcgacgcgccgccgcttgcccgtcatccgaagcgcggcgatgcgggatcgtcgcct
tcgtcttcaccgtcgagttcgacttcgacttcgccttcgatttcggcgtcagggcgcacg
cgcgggggcggtcgttccgcctcgcgcgatcgagccggcgatgcggacgaaggcgcgaac
gaagacgcgaacgatcacgcgccgcgcgagcgcgccggcgcgccgaaggtggcgggcgtg
cgcgtctcgcatcccggccgcgtgatcgatccgcacacgggcacgcgcaagctcgacctc
gtcgaatactgggaatggatcgcgccgtggctgctgccgcatctgaagggccggccggtg
tcgctcgtgcgcgcgcccgccgacatcggcggcgagctgttcttccagaagcacgcggac
aagctggagattccgaacgtcgcgctgcacgcggggctcgacccgggccatgaggcgctc
atcacgatcgacgatgtgaaggggctcgtcggcgccgcgcaaatgggcacgatcgagctg
cacacgtggaacgcgcacgtgtcgaacatcgagaagccggaccgcgcggtgttcgacctc
gacccggacccgtcgctcgactggcgcgcggtgatcgaggccgcgcagctcacgcgcgcg
ctgctggacgagctcggcctcgtgtcgttctgcaagacgagcggcggcaaggggctgcac
gtcgtcgtgccgctcgcgcgccatgcgggctgggacgacgtgaaggcgttcgcgcacgcg
gtggcgcggcacatggcggcgaccctgcccgagcgcttcaccgcgacgatggggccgcgc
aaccggaagggcaagatcttcgtcgactatctgcgcaacaaccgcggcgcgagcacgatc
gccgcgtactcggtgcgcgcgaggctggggcttggcgtatcggtgccgatcgcatgggac
gaactgccggatacgacgggcgccgcgcaatggacgctcgcgaacctgcacgagcgtctc
gacgcgctgaagcacgacccgtggcgcgcctatgcgcatgtgcggcaacgcgtgacggcg
gcgttgcggaagcggctgagcgatgggtag
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