Bifidobacterium pseudocatenulatum: BBPC_0724
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Entry
BBPC_0724 CDS
T03932
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
bpsc
Bifidobacterium pseudocatenulatum
Pathway
bpsc03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
bpsc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
BBPC_0724
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bpsc03400
]
BBPC_0724
Enzymes [BR:
bpsc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
BBPC_0724
DNA repair and recombination proteins [BR:
bpsc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
BBPC_0724
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
CarD_TRCF_RID
Helicase_C
ResIII
RecG_dom3_C
AAA_22
Motif
Other DBs
NCBI-ProteinID:
BAR03402
UniProt:
C0BSS8
LinkDB
All DBs
Position
893092..896640
Genome browser
AA seq
1182 aa
AA seq
DB search
MAAEPVQLPTSGSLAGILDVLETDEDFRALISDEIEVPESDIDPSITVGVPEGLRPALAA
GAAGTRPVVLVVASGREAEEMVEAIRSWYSGDPNDVAQLEAWETLPHERLSPRADTVASR
MAVFRRLMHPQEGSKLFGPIRILVMPVRSLIQPVVAGLGDVEPLVFSQGEELALDEASHR
LVENAYTRVDLVMDRGEFAVRGGIIDVFPPTLPHPVRIEFFGDEIDTIKEFHASDQRTYG
SDIPMVWATPCRELQLTEKVRVRAKSLIGSIPNAEDMLESIANAIPVEGMESLLPALVDD
MEPVQGMLPKRALVMLSDPEKLRRAADDLAKTANEFLAASWHVAASGHGAGAPITFDQAN
FYDFEETISSLVFSRHDVWKLTSFGVNSSREGRVQLDATNPGEYRGDEAKTASGIEGLLD
AGYAVTVTAGAQGTLVRLKRAINETGIANFDCIRSRAIDGFVDNAAKVALLTERDLTGRT
SAAGQAKTPKRRRKAIDLMELKAGDYVVHEQHGIGRFLEMRQRTIGAGANQTTREYLVIE
YASSKRGAPADKLFIPTDQLDQVSKYIGADAPKLNKLGGSDWAATKAKARKHVHEIAEDL
VKLYSARQRMQGYAFSKDTPWQKELEDAFPYQETADQLTTIDEVKSDMEKPVPMDRLICG
DVGFGKTEIAVRAAFKAVQDSKQVAVLVPTTLLVQQHFETFTERFEGFPVEVRAMSRFQT
TKEINDTIEGLEDGSVDVVIGTHKLLGPKVKFKDLGLVIIDEEQRFGVEHKETLKALRTN
VDVLSLSATPIPRTLEMAVTGIREMSTLATPPEDRLPVLTYVGAYEDAQVTAAVRRELLR
GGQVFYVHNRVQDIASVAAKIHELVPESHVGIAHGKMGEKQLDGVIRDFWHRDIDVLVCT
TIIETGLDISNANTLIVDHADRFGLSQLHQLRGRVGRGRERAYAYFLYDPTKPMTQQSHD
RLATIAQNTALGSGFDVAMKDLELRGTGNLLGDEQSGHIEGVGFDLYVRMVSEAVEQYKE
PERTESVAVTIDLPIEASIPVSYIDSDKLRLEAYRKLAGARTEADLDELRDELTDRYGKP
PVDFEALFDVARLRFKARKLGITEIIGQGRNVRVAKFEPRESVQMRMARIYKGIQYRPMT
KTYLIPAPFAGSLGSGPMSSDEIVGWTNQLLDDLDWKPTPKK
NT seq
3549 nt
NT seq
+upstream
nt +downstream
nt
atggccgctgaaccggtgcaactgccgacgtcaggttcgctggctggcattctcgacgta
ctcgaaaccgatgaggattttcgtgcgctgatttccgatgagatcgaagtgccggaatcc
gacatagaccccagcatcaccgttggcgttcccgaaggattgcgtccggcgctcgctgcc
ggggcagcgggaacacgaccggttgtgcttgtggtggcttccgggcgcgaggccgaggaa
atggttgaggcgattcgttcgtggtattccggcgatccaaacgatgtggcacagcttgaa
gcgtgggaaaccttgccgcacgaacgtctttcgcctcgcgccgataccgtggcgagccgt
atggcggtgttccgcagactgatgcaccctcaagagggaagcaagctgtttggccccatc
aggattctcgtcatgccggtgcgttccctgattcagcctgtggttgcgggcttgggggat
gtggagccgctggtgttctcccaaggtgaggagttggcgctcgatgaggcgtcgcatcga
ctggtggagaatgcgtatactcgagtcgacttggtgatggatcgtggtgaattcgcagtg
cgaggcggcattatcgacgtgtttcctccaacattgccgcatccggttcgtatcgaattc
ttcggtgacgaaatcgataccatcaaggaattccatgcatccgaccagcgtacgtatggc
agtgacattccgatggtctgggccacgccatgccgtgagctgcagctgaccgaaaaggtg
cgcgtgcgtgcgaaatccctgatcggctccattccaaacgccgaagacatgcttgaatcc
attgccaacgccattcctgtcgaaggcatggaatcgttgcttcccgcattagtcgatgat
atggaaccggtgcagggcatgcttcccaagcgtgcgttggtgatgctgtccgatccggaa
aaattgcgtcgcgctgccgacgatcttgccaaaacggctaatgaattccttgcagccagt
tggcatgttgctgcatccggtcatggtgccggtgctccaatcacattcgatcaggcgaat
ttctacgattttgaggaaacgatttcctcactggtgttctctaggcatgacgtatggaag
cttacgagtttcggtgtgaactccagtagggaaggccgcgttcagctcgacgccaccaat
cctggagaatatcgcggagatgaggccaagacagcttccggtatcgaaggtcttcttgat
gccggctatgccgtcaccgtcactgcaggagcgcaaggcactcttgttcgactcaaacgt
gccatcaacgaaacgggaatcgccaacttcgactgcatcagatcgcgtgccatcgacgga
ttcgtcgataatgccgcgaaagtcgcactgcttaccgaacgcgacctgaccggacgtaca
tcggccgcgggacaggcaaaaacacctaaacgtcgccgtaaggccatcgaccttatggag
ctcaaagccggcgattacgtggtgcatgagcagcatggcatcggcaggttcctcgaaatg
cgccagcgtaccatcggagcgggcgccaaccagaccacacgcgagtatctggtcatcgaa
tacgcatccagcaagcgcggcgcacctgccgacaaactgttcatccccaccgaccagctt
gaccaagtcagcaaatacatcggtgccgacgctccaaaactcaacaaactgggcggatcc
gactgggctgccaccaaggcgaaagcacgtaagcatgtgcacgaaatcgccgaagatctg
gtcaaactgtattcggcacgtcaacgtatgcaggggtatgccttcagcaaagacacccct
tggcagaaagaactggaagacgctttcccgtaccaagaaaccgctgatcagctgaccacc
atcgacgaagtcaaatccgatatggaaaagcccgtgccgatggatcgcctgatttgcggc
gacgtgggattcggcaaaaccgaaatcgccgtacgtgccgcattcaaggcggtgcaggat
tccaaacaggtggctgtgctggtgccgaccacattgctggtgcaacagcatttcgagacg
ttcaccgaacgttttgaaggattcccggtggaagtaagggcgatgagccgtttccaaacc
accaaggagatcaacgacaccatcgagggacttgaagacggttccgtcgatgtggtgatc
ggtacgcacaaactgctcggaccgaaggtcaaattcaaggatctgggactggtcatcatc
gatgaggagcagcgtttcggcgtcgaacacaaagagacgttgaaggcgctgcgtaccaat
gtggatgtgctgagtctgtcggcaacaccgattccgcgaacgctggagatggccgttaca
ggcattcgtgaaatgtccacgttggccacgcctccggaagaccgcttgccggtgcttacc
tacgttggcgcgtatgaggatgctcaggtcactgctgcggtcagacgtgagctgttgcgc
ggtggccaggtgttctacgtgcacaaccgagtgcaagacatcgcttcggttgccgcgaag
attcacgagctggtgccggaatcgcatgtcggcatcgcccatggcaagatgggggagaag
cagcttgacggtgtgatccgagacttctggcatcgcgacattgatgtgctcgtatgcacc
accatcatcgaaaccggtcttgatatttccaatgcgaatacgttgatcgtcgatcatgcc
gaccgtttcggcctaagccagcttcatcagttgcgtggtcgtgtcgggcgaggccgtgag
cgtgcctacgcgtacttcctatatgatccaaccaagccgatgacccagcagtcgcatgac
cgactggccaccatcgcgcagaacactgcgctcggttcaggttttgacgtggcgatgaag
gatcttgagctgcgtggcaccggcaatctgctgggcgacgagcagagcgggcatatcgag
ggtgttggtttcgatctgtatgtgcgcatggtgtccgaggccgtcgagcagtacaaggaa
ccggaacgtacggaatcggttgctgtcaccatcgatctgccgatcgaagcgtccattccc
gtcagctacatcgattccgacaaattgcgattggaagcctaccgcaagttggcgggtgct
cgtacggaagccgatcttgacgagttgcgtgatgagcttacggatcgttacggcaagcct
ccggtcgatttcgaggcgctgttcgatgtggcgagacttcggttcaaggcaaggaagttg
ggcattaccgaaatcatcgggcaaggccgtaacgttcgtgtcgccaaattcgagccacga
gaatccgtgcaaatgcgcatggccagaatctacaagggcattcaataccgtccgatgact
aaaacatacctgattcccgcgccgttcgcaggttcgctgggatctggtccaatgagctct
gatgaaatcgttggttggacgaaccaattgctggatgaccttgactggaagccaacgcca
aagaaatag
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