Burkholderia pseudomultivorans: WS57_15615
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Entry
WS57_15615 CDS
T04870
Name
(GenBank) DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
bpsl
Burkholderia pseudomultivorans
Pathway
bpsl03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
bpsl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
WS57_15615
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bpsl03400
]
WS57_15615
Enzymes [BR:
bpsl01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
WS57_15615
DNA repair and recombination proteins [BR:
bpsl03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
WS57_15615
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
AOI90309
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Position
1:632689..635355
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AA seq
888 aa
AA seq
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MADKLEPYRRMRRFDATPEPEGAHGRRRAAAGARSKPPARGRQPLRYVIQEHHARRLHYD
FRLELDGTLKSWAVPKGPSVDPSVKRLAVHVEDHPLEYASFEGEIPAGHYGAGSVVVWDE
GTWVPDGGLAGARDGYRAGKLKFRLDGRKLHGGWALVRSGRQEGRQEQWLLIKERDDEAR
DAEGYDVVAQQPGSVHRRAASRPLAPSGIEGAVRAPLPERVAPQLATLVDAPPAHGDWRY
ELKFDGYRILARIAGKGARRHVTLMTREGRDWTAKLRPQRDALAALGVDDAWLDAEAVVL
GEHGLPDFQALQNALGAGRADAVTLFVFDLPYLDGYDLRDAPLTARRALLEPLLADCDPV
RLRFSPDLGDDVATLIANACDTGLEGLIGKRADARYRAGRSPAWIKLKCRRRQEFVIGGY
TEPSGARNGFGALLLGVHEPAPPGRKRRDAGPLRYVGRVGTGFDTRTLDRLAAILRAHER
DAAPFDPPPREWSRTRVHWVEPTLVAECEFAEWTGDGIVRQAAFIALRDDKPAAQIVREV
ARHTATEATMDERNTTDGARDGAQHDRDATRARTRRSTGAQSRAGTPRGEAAPDRVGRVR
ITHPERVVDPQHGTRKIDLAHYWEWVAPWLLPDLAGRPVSLVRAPEDITGELFFQKHADR
REIPYVARHAGLDPGHGPLLTIDSVDALVGAAQMGTVELHTWNAHVSNIERPDRIVFDLD
PDPALPWRAMIDAAQLVRGLLDELGLVSFCKTSGGKGLHVVVPITRHAGWDEVKDFSRAV
AQHVAAALPDRFTATMGPRNRRGKIFIDYLRNGRGASTIAAYSVRARPGMGVSVPIGWDE
VPDTTGGAQWTIDTLHERLEHLARDPWEDYAGTRQRITARMRARLATS
NT seq
2667 nt
NT seq
+upstream
nt +downstream
nt
atggccgacaagctcgaaccctatcgccggatgcgccgcttcgacgcgacgccggagccc
gaaggcgcgcacggccggcgccgcgcggcagccggcgcgcggtcgaagccgcccgcgcgc
ggccggcagccgttgcgctatgtgatccaggaacatcacgcgcgccgcctgcattacgac
ttccgtctcgaactcgacggcacgctgaagtcctgggcggtgccgaaagggcccagcgtc
gatccgtcggtgaagcgcctcgcggtgcatgtcgaggatcatccgctcgaatacgcgtcg
ttcgagggcgagatcccggccggccattacggcgccggttcggtcgtcgtctgggacgaa
ggcacgtgggtgccggacggcgggctggccggcgcacgcgacggctatcgtgcgggcaag
ctgaagttccggctcgacggccggaagctgcacggcggctgggcgctggtgcgcagcggc
cggcaggaagggcggcaggagcaatggctgctgatcaaggaacgcgacgacgaggcgcgc
gacgcggagggctacgacgtcgtcgcgcagcagccgggcagcgtgcatcggcgcgctgct
tcgcgcccgctcgcgccgtccggcatcgaaggcgcggtgcgcgcgccgctgcccgagcgc
gtcgcgccgcagctcgcgacgctggtcgacgcgccgcccgcgcatggcgactggcgctac
gaactgaagttcgacggctaccggatcctcgcgcgcatcgcgggcaagggcgcgcgacgg
cacgtgacgctgatgacgcgcgaagggcgcgactggaccgcgaagctgcggccgcagcgc
gacgcgctcgcggcgctcggcgtcgacgacgcgtggctcgacgccgaggccgtggtgctc
ggcgagcacgggctgcccgatttccaggcgctgcagaacgcgctcggcgcggggcgagcg
gatgccgtcacgctgttcgtgttcgacctgccctatctcgacggctacgacctgcgcgat
gcgccgctgaccgcgcgccgcgcgctgctcgaaccgctgctcgccgactgcgacccggtg
cggctgcgcttttcgcccgatctcggcgacgacgtcgcgacgctgatcgcgaacgcgtgc
gacacgggcctcgaaggcctgatcggcaagcgcgccgacgcgcgctatcgcgcggggcgc
tcgccggcgtggatcaagctgaaatgccggcgccggcaggaattcgtgatcggcggctat
accgagccgtcgggcgcccgcaatggtttcggcgcgctgctgctcggcgtgcacgagccg
gcgccgcccggcaggaagcgacgcgacgccgggccgctgcgctatgtcggccgcgtcggg
accggcttcgacacgcgcacgctcgaccggctggccgcgatcctgcgcgcgcacgaacgc
gacgcggcgccgttcgatccgccgccgcgcgagtggtcgcgcacgcgcgtgcactgggtc
gagccgacgctcgtcgccgaatgcgagttcgccgaatggaccggcgacggcatcgtgcgc
caggcagccttcatcgcgctgcgcgacgacaagccggcggcgcagatcgtcagggaggtt
gcacgacacaccgcaacggaggcaacgatggacgagcgcaacacgacggatggcgcgcgc
gacggcgcgcagcacgaccgtgacgcgacgcgcgcgcgaacccgacgcagcacgggggcg
cagtcgcgcgccggcacgccccgcggcgaggccgcgcccgatcgggtcggccgcgtgcgc
atcacccatcccgagcgtgtggtcgatccgcagcacggcacccgcaagatcgatctcgcg
cactactgggaatgggtcgcgccgtggctgctgcccgatctcgcggggcggccggtgtcg
ctggtgcgcgcgccggaggacatcaccggcgagctgttcttccagaagcatgcggatcgg
cgcgagattccgtacgtcgcgcggcatgccggcctcgatccgggtcacgggccgctgctg
acgatcgacagcgtcgacgcgctggtcggcgccgcgcagatgggtacggtcgagctgcat
acgtggaacgcgcacgtgtccaatatcgagcgcccggaccggatcgtgttcgacctcgat
cccgatcccgcgctgccgtggcgcgcgatgatcgacgccgcgcagctcgtgcgcggcctg
ctcgacgaactcgggctcgtgtcgttctgcaagacgagcggcggcaaggggctgcacgtg
gtcgtgccgatcacgcggcacgcgggctgggacgaggtgaaagacttctcgcgcgcagtc
gcgcagcatgtcgcggcggcgctgcccgaccgcttcaccgcgacgatggggccgcgcaac
cggcgcggcaagatcttcatcgactacctgcgcaacgggcgcggcgcgagcacgatcgcg
gcctactcggtgcgcgcacggcccggcatgggcgtgtcggtgccgatcggctgggacgag
gtgcccgacaccaccggcggcgcgcagtggacgatcgacacactgcacgaacgactcgaa
cacctcgcgcgcgatccgtgggaagactacgcgggcacgcggcagcggatcaccgcgcgc
atgcgtgcgcggctcgcgacgtcgtga
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