Burkholderia pseudomallei MSHR511: BBQ_1238
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Entry
BBQ_1238 CDS
T03012
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
bpsm
Burkholderia pseudomallei MSHR511
Pathway
bpsm03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
bpsm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
BBQ_1238 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bpsm03400
]
BBQ_1238 (mfd)
Enzymes [BR:
bpsm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
BBQ_1238 (mfd)
DNA repair and recombination proteins [BR:
bpsm03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
BBQ_1238 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
MFD_D3
CarD_TRCF_RID
ResIII
UB2H
Glyco_tran_WecG
ERCC3_RAD25_C
SNF2-rel_dom
Motif
Other DBs
NCBI-ProteinID:
AHG35122
LinkDB
All DBs
Position
1:complement(1374191..1377664)
Genome browser
AA seq
1157 aa
AA seq
DB search
MSDNASPSQSPVALVKAGQRFAFDGAHGSADALVIARYLAAHRAQVPLLAVICANAVDAQ
RLAQELAYFAPDARVRVLPDWETLPYDTFSPHQDLVSERLATLHDLGEGRCDILLVPATT
ALYRMPPASFLAAYTFSFTQGERLDEAKLKAQLTLAGYEHVSQVVRPGEYCVRGSLIDLF
PMGSPLPYRIDLFDDQVDSIRAFDPDTQRSLYPVRDVRLLPGREFPFDEAARTAFRSRWR
ETFEGDPSRAPIYKDIGNGVPSAGIEYYLPLFFDETATLFHYLPERAQLVFTGDLDAAIK
RFTADTKQRHAFLSHDRERPILEPQRLFLSDDDFYLLAKPFARIVLPAQPSGGWAAPLPN
LALERHADAPLAAFAAYLETTKNRVLFTVESAGRRETIAQLFAEHHLRPAGSDSFAAWLA
SDERFALGVAPLANGFAVPGEGYAIVTETELYGALGRRAGRRRQEQASNVDAMVRDLSEL
KVGDPVVHAQHGIGRYMGLVSMDLGEGDTEFLHLEYAGDSKLYVPVAQLHVISRYSGADP
DSAPLHALGSGQWERAKRRAAQQIRDTAAELLNLYARRAAREGHAFGLDPRDYVKFADSF
GFEETPDQAAAIAAVIGDMTSGKPMDRLVCGDVGFGKTEVALRAAFIAVMGGKQVALLSP
TTLLAEQHTQTFADRFADWPVRIVELSRFKTAKEVNAAIAQINEGSVDIVIGTHKLLSSD
VQFKRLGLVIIDEEHRFGVRQKEALKALRAEVDVLTLTATPIPRTLGMALEGLRDFSVIA
TAPQKRLAIKTFVRREEESVIREAMLRELKRGGQVYFLHNEVETIENRKAMLEELVPEAR
IVIAHGQMHERELERVMRDFVAQRANVLLCTTIIETGIDVPSANTIIMHRADKFGLAQLH
QLRGRVGRSHHQAYAYLLVHDPQALTKQAQRRLEAIQQMEELGSGFYLAMHDLEIRGTGE
VLGDKQSGEIHEIGFQLYTEMLNDAVKALKNGKEPDLTAPLAATTEINLHAPAILPADYC
GDVQERLSLYKRLANCEHGDAIDGIQEELIDRFGKLPPQAHALVETHRLRLAAKPLGIVK
IDASEAAIGLQFVPNPPIDPMRIIDMVQKHRHIKLAGQDKLRIETRTPDLAVRVSTVKET
LRALGQPQQPRAQAAAR
NT seq
3474 nt
NT seq
+upstream
nt +downstream
nt
atgtcagacaacgcctccccttcgcagtcccccgtcgcgctcgtcaaggcgggccagcgc
ttcgccttcgacggcgcacacggctccgccgacgcgctcgtcatcgcccgctatctcgcc
gcgcaccgcgcgcaggtgccgcttctcgccgtgatctgcgcgaacgcggtcgacgcgcaa
cggctcgcgcaggagctcgcctacttcgcgcccgacgcgcgcgtgcgcgtgctgcccgac
tgggagacgctgccgtacgacacgttctcgccgcaccaggatctcgtgtccgagcggctc
gcgacgctgcacgacctcggcgaaggccgctgcgacatcctgctcgtgcccgcgacgacg
gcgctctaccggatgccgcccgcgtcgttcctcgccgcgtacacgttctcgttcacgcag
ggcgagcggctcgacgaagcgaagctgaaggcgcagctgacgctcgccggctacgagcac
gtgagccaggtcgtgcggcccggcgaatactgcgtgcgcggctcgctgatcgacctgttc
ccgatgggctcgccgctgccgtaccggatcgatctgttcgacgatcaggtcgactcgatc
cgcgcgttcgatccggacacgcagcgcagcctctacccggtgcgcgacgtgcgcctgctg
cccggccgcgaattcccgttcgacgaggccgcgcgcaccgcgttccgaagccgctggcgc
gagacgttcgagggcgacccgagccgcgcgccgatctacaaggacatcggcaacggcgtg
ccgtcggccggcatcgagtattacctgccgctcttcttcgacgagacggcgacgctcttc
cactatctgcccgagcgcgcgcagctcgtgttcacgggcgatctcgacgcggcgatcaag
cgcttcaccgccgacacgaagcagcgccacgcgttcctgtcgcacgatcgcgagcggccg
atcctcgagccgcagcgcctgttcctctccgacgacgatttctacctgctcgccaagccg
ttcgcgcggatcgtgctgcccgcgcagccgtcgggcggctgggccgcgccgctgccgaat
ctcgcgctcgagcgccacgcggacgcgccgctcgccgcgttcgccgcgtatctcgaaacg
acgaagaaccgcgtgcttttcaccgtcgaatcggcgggccgccgcgagacgatcgcgcaa
ctgttcgccgagcaccatctgcggccggcgggcagcgacagcttcgccgcgtggctcgcg
agcgacgagcgcttcgcgctcggcgtcgcgcccctcgcgaacggcttcgcggtgccgggc
gagggttacgcgatcgtcaccgagaccgagctgtacggcgcgctcggccgccgcgcgggg
cgccgccgccaggaacaggcgagcaacgtcgacgcgatggtgcgcgatctgtccgagctg
aaggtgggcgacccggtcgtccatgcgcagcacgggatcggccgctacatggggctcgtg
tcgatggatctcggcgaaggcgacaccgagttcctgcatctcgaatacgcgggcgacagc
aagctgtacgtgcccgtcgcgcaactgcacgtgatctcgcgctacagcggcgcggacccg
gacagcgcgccgctgcacgcgctcggctccggccagtgggagcgtgcgaagcgccgcgcc
gcgcagcagatccgcgatacggccgccgagctgctgaacctgtacgcgcgccgcgcggcg
cgcgagggccacgcgttcgggctcgacccgcgcgactacgtgaagttcgccgacagcttc
ggcttcgaggaaacgccggaccaggccgcggcgatcgcggccgtgatcggcgacatgaca
agcggcaagccgatggaccgcctcgtgtgcggcgacgtcggcttcggcaagaccgaggtc
gcgctgcgcgcggcattcatcgcggtgatgggcggcaagcaggtcgcgctgctctcgccg
accacgctgctcgccgagcagcacacgcagaccttcgccgaccgcttcgcggactggccg
gtgcgcatcgtcgagctgtcgcgcttcaagaccgcgaaggaagtgaatgcggcgatcgcg
cagatcaacgaaggcagcgtcgacatcgtgatcggcacgcacaagctgctgtcgtcggac
gtgcagttcaagcgcctcggcctcgtgatcatcgacgaggagcaccgcttcggcgtgcgc
cagaaggaagcgctgaaggcgctgcgcgcggaagtggacgtgctcacgctgaccgcgacg
ccgatcccgcgcacgctcggcatggcgctcgaagggctgcgcgatttctcggtgatcgcg
accgcgccgcagaagcggctcgcgatcaagaccttcgtgcgccgcgaggaagaaagcgtg
atccgcgaggcgatgctgcgcgagctcaagcgcggcggccaggtgtacttcctgcacaac
gaggtcgagacgatcgagaaccgcaaggcgatgctcgaggagctggtgcccgaggcgcgc
atcgtgatcgcgcacggccagatgcacgagcgcgagctcgaacgcgtgatgcgcgatttc
gtcgcgcagcgcgcgaacgtgctgctgtgcacgacgatcatcgagaccggcatcgacgtg
ccgagcgcgaacacgatcatcatgcaccgcgcggacaagttcggcctcgcgcagttgcac
cagttgcgcgggcgcgtcggacgctcgcaccatcaggcatacgcgtacctgctcgtgcac
gatccgcaagcgctgacgaagcaggcgcagcgccggctcgaggcgatccagcagatggag
gagctcggctcgggcttctatctcgcgatgcacgacctcgagatccgcggcaccggcgaa
gtgctcggcgacaagcagtcgggcgagatccacgagatcggcttccagctctacaccgag
atgctgaacgatgcggtgaaggcgctgaagaacggcaaggagccggacctgaccgcgccg
ctcgccgcgacgaccgagatcaacctgcacgcgcccgcgatcctgcccgccgactattgc
ggcgacgtgcaggagcggctgtcgctgtacaagcggctcgcgaactgcgagcacggcgat
gcgatcgacggcatccaggaggagctgatcgaccgcttcggcaaactgccgccgcaggcg
cacgcgctcgtcgagacgcaccggctgcggctcgccgcgaagccgctcggcatcgtgaag
atcgacgcgagcgaagcggcgatcgggctgcagttcgtgccgaatccgccgatcgatccg
atgcggatcatcgacatggtgcagaagcaccggcacatcaagctcgcgggccaggacaag
ctgcgcatcgagacgcgcacgccggacctcgcggtgcgcgtgtcgacggtgaaggaaacg
ctgcgcgcgctcggccagccgcagcagccgcgcgcgcaggcggcggcgcggtag
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integrated database retrieval system
