Burkholderia pseudomallei MSHR146: BBN_5703
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Entry
BBN_5703 CDS
T03024
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
bpsu
Burkholderia pseudomallei MSHR146
Pathway
bpsu03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
bpsu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
BBN_5703 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bpsu03400
]
BBN_5703 (ligD)
Enzymes [BR:
bpsu01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
BBN_5703 (ligD)
DNA repair and recombination proteins [BR:
bpsu03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
BBN_5703 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
AHG70707
LinkDB
All DBs
Position
2:complement(2802131..2805622)
Genome browser
AA seq
1163 aa
AA seq
DB search
MAGKLSVYRSRRRFGETPEPEGARRSPRRTKGTGRAGDESKRRARGDAAASSRGERAARS
GRAQQPAPARARGRSALHYVIQEHHARRLHYDFRLELDGTLKSWAIPKGPSLDPSVKRLA
VHVEDHPLEYAAFEGEIPEGHYGAGSVIVWDRGAWTPAGGVAAARAGYRAGKLSFTLDGD
KLHGGWALVRGRGLRDSGGKHEQWLLIKERDGDARDEADYDVLRARPGSVLGGARSARAR
RGRAAEPTERDAAAPKRARASVPKGRAEAKTSGRAPRTVSNGTAGAGKGASKRASKREGT
NTGNGARSGKGSGKGAGEGVATSRRKRAAAPQSSDVDSADTDSPAARGLALPAGLAARFG
LSGAKRAALPRTLRPQLATLVDAPPPGKDWLYEAKFDGYRVLIRIDRGAASCPIAVYTRE
GLDWSAKFAAQLDALARLPVDRGWLDGEAVVLDRAGVPDFQALQNALGAGRSNDVTLFLF
DVPFLNGFDLRGVPLERRRALLAALVAAHASDVLRYSESLAFEAADLLTGACDAGLEGLI
GKRRDGRYVEGRSRSWIKLKCRRRQEFVIGGYTEPAGRRSGFGALLLGVYARAPGDEGDE
GERRTRGAAETRDERRRASHASRTSRTSRTSRAPDAGAARAPQARPLALRYVGRVGTGFG
ERTLRALARTLREHETGRMPFADVPRERSGTPVHWVKPVLVAECEFAEWTGDGIVRQASF
VGLREDKPARTIVREQPQSMETEAMNEHADEHTDEHTDARAERRTGGRTRRKARDGGARD
APPLARHPKRGDAGSSARKGARDGEAGKRAAAGSSPSSSPSSSTSPSISASGRTRGGGRS
ASRDRAGDADEGANEDANDHAPRERAGAPKVAGVRVSHPGRVIDPHTGTRKLDLVEYWEW
IAPWLLPHLKGRPVSLVRAPADIGGELFFQKHADKLEIPNVALHAGLDPGHEALITIDDV
KGLIGAAQMGTIELHTWNAHVSNIEKPDRAVFDLDPDPSLDWRAVIEAAQLTRALLDELG
LVSFCKTSGGKGLHVVVPLARHAGWDDVKAFAHAVARHMAATLPERFTATMGPRNRKGKI
FVDYLRNNRGASTIAAYSVRARPGLGVSVPIAWDELPDTTGAAQWTLANLHERLDTLKHD
PWRAYAHVRQRVTAALRKRLSDG
NT seq
3492 nt
NT seq
+upstream
nt +downstream
nt
atggcgggaaaactcagcgtgtaccgcagcaggcggcgcttcggcgaaacgccggagccc
gagggcgcgcggcggtcgccgcgccgcacgaaaggcacgggccgcgcgggcgacgaatcg
aagcggcgcgcgcgcggcgatgcggcggcgtcgagccgcggcgagcgcgccgctcgcagc
ggccgcgcgcagcagccggcgccggcgcgcgcgcgcggcaggtccgcgcttcattacgtg
atccaggagcatcacgcgcgccgcttgcattacgactttcgtctcgaactcgatggcacg
ctcaaatcgtgggcgatcccgaaagggccgagcctcgatccttcggtcaagcggctcgcg
gtgcacgtcgaggatcatccgctcgaatacgcggcgttcgagggcgagattccggaaggc
cattacggcgcgggctcggtgattgtctgggatcgcggcgcatggacgcccgccggtggc
gtcgccgccgcgcgcgccggctatcgcgcgggcaagctgagcttcacgctcgacggggac
aagctgcacggcggctgggcgctcgtgcgcggccgcgggctgcgtgacagcggcggcaag
cacgagcaatggctgctgatcaaggaacgcgacggcgacgcgcgcgacgaagcggactac
gacgtgctgcgcgcacggccgggcagcgtgctcggcggcgcgcggtccgcgcgggcgagg
cgcgggcgcgcggccgagccgacggagcgcgacgccgccgcgccgaagcgggcgcgcgct
tcagtgccgaaagggcgcgccgaagcgaagacgagcgggcgtgcgccgcgcaccgtgtcg
aacgggactgcgggcgcgggtaagggcgcaagcaagcgtgcaagcaagcgcgagggcacg
aataccggaaacggcgcgagaagcggcaagggcagcggcaagggcgcgggcgagggcgtg
gccacatcgcgccgcaaacgcgccgccgcgccgcagtcgtccgacgtcgattcggccgat
accgattcacccgcggcgcgcggcctcgcgttgcccgccgggcttgccgcgcgcttcggc
ctgagcggcgcgaagcgcgcggcgctgccgcgcacgttgcggccgcaactggcgacgctc
gtcgatgcgccgccgcccggcaaagactggctatacgaagcgaagttcgatggctaccgc
gtgctgatccggatcgatcgcggcgcggcgtcctgcccgattgccgtctacacgcgcgag
gggctcgactggagcgcgaaattcgccgcgcagctcgacgcgctcgcgcgcctgccggtc
gaccggggctggctcgacggcgaggcggtcgtgctcgatcgcgcgggcgtgccggatttc
caggcgctgcagaacgcgctcggcgccggacgctcgaacgatgtcacgctgttcctgttc
gacgtgccgttcctgaacggcttcgacctgcgcggcgtgccgctcgaacggcggcgcgcg
ctgctcgccgcgctcgtcgccgcgcatgcgagcgacgtgctgcgttactcggagagcctc
gcgttcgaggccgccgatctgctgacgggcgcgtgcgacgcggggctcgaagggttgatc
ggcaagcggcgcgatggccggtacgtcgaggggcgctcgagatcgtggatcaagctgaag
tgccggcgcaggcaggagttcgtgattggcggctacacggagccggccggacggcgcagc
ggattcggcgcgttgctgctcggcgtgtacgcccgggcgccgggcgacgagggcgacgag
ggcgaacgaaggacgcgcggcgcggccgaaacgcgcgacgagcggcgtcgtgcatcccac
gcatcccgcacgtcccgcacatcccgcacatcccgcgcgcccgatgccggcgcggcgcgc
gcaccgcaggcgcggccgctcgcgttgcgctacgtcggccgcgtcggcaccggcttcggc
gagcgcacgcttcgcgcgctcgcgcggacgctgcgcgagcacgagaccgggcggatgccg
ttcgcggacgtgccgcgcgagcgcagcggcacgccggttcactgggtgaagcccgtgctc
gtcgccgaatgcgaattcgcggaatggacgggcgacggcatcgtccggcaggcgtcgttc
gtcgggctgcgcgaagacaagccggcgcgcacgatcgttcgcgagcaaccgcaatccatg
gagacggaagccatgaatgaacacgctgacgaacatacggatgaacataccgatgcacgc
gccgaacgtcgcaccggcggacgcacgcggcgcaaagcacgtgacggcggcgcgcgcgac
gcgccgccgcttgcccgtcatccgaagcgcggcgatgcgggatcgtccgcgcgcaagggc
gcgcgggacggggaggcgggcaagcgcgccgccgcggggtcgtcgccttcgtcttcaccg
tcgagttcgacttcgccttcgatttcggcgtcagggcgcacgcgcgggggcggtcgttcc
gcctcgcgcgatcgagccggcgatgcggacgaaggcgcgaacgaagacgcgaacgatcac
gcgccgcgcgagcgcgccggcgcgccgaaggtggcgggcgtgcgcgtctcgcatcccggc
cgcgtgatcgatccgcacacgggcacgcgcaagctcgacctcgtcgaatactgggaatgg
atcgcgccgtggctgctgccgcatctgaagggccggccggtgtcgctcgtgcgcgcgccc
gccgacatcggcggcgagttgttcttccagaagcacgcggacaagctggagattccgaac
gtcgcgctgcacgcggggctcgacccgggccatgaggcgctcatcacgatcgacgatgtg
aaggggctcatcggcgccgcgcaaatgggcacgatcgagctgcacacgtggaacgcgcac
gtgtcgaacatcgagaagccggaccgcgcggtgttcgacctcgacccggacccgtcgctc
gactggcgcgcggtgatcgaggccgcgcagctcacgcgcgcgctgctggacgagctcggc
ctcgtgtcgttctgcaagacgagcggcggcaaggggctgcacgtcgtcgtgccgctcgcg
cgccatgcgggctgggacgacgtgaaggcgttcgcgcacgcggtggcgcggcacatggcg
gcgaccctgcccgagcgcttcaccgcgacgatggggccgcgcaaccggaagggcaagatc
ttcgtcgactatctgcgcaacaaccgcggcgcgagcacgatcgccgcgtactcggtgcgc
gcgaggccggggcttggcgtatcggtgccgatcgcatgggacgaactgccggatacgacg
ggcgccgcgcaatggacgctcgcgaacctgcacgagcgtctcgacacgctgaagcacgac
ccgtggcgcgcctatgcgcatgtgcggcaacgcgtgacggcggcgttgcggaagcggctg
agcgatgggtag
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