Bacillus pumilus MTCC B6033: BW16_09190
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Entry
BW16_09190 CDS
T03175
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
bpum
Bacillus pumilus MTCC B6033
Pathway
bpum03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
bpum00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
BW16_09190
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bpum03400
]
BW16_09190
Enzymes [BR:
bpum01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
BW16_09190
DNA repair and recombination proteins [BR:
bpum03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
BW16_09190
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_ligase_A_M
DNA_ligase_A_C
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
AHL71548
LinkDB
All DBs
Position
complement(1748492..1750357)
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AA seq
621 aa
AA seq
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MKPMRLTSAHDIPVGADWLYELKYDGFRAILIWEIDTIHLESRAGKRLNKQFPEVIDQCQ
QLTKQLAPFLPLTLDGELVFLLSEQESDFTKVQQRGRLKNTETIQRQAKRFPCHLIAFDL
LRCKGKSLVDLPLIERKAELHEVFQAANLPPSVQLNHPSLLQIIQTDSSPDDMKKIMLTY
LAEGLVAKKKMSKWQEHTRSKEWLKIKNWRYVSVIVTRFDKDNGYFQGCLYQETNLIEVV
QFKHGFSKEEEQTLRTLFLTKGQMTEASHYEIPPSIVAKIACISFDGSALREPRFSSFLF
DADPATCTFQHMLKQLYPLPAMIDITHPEKPVVPALHITKADYLLYLRQAASCLLPFLRE
RRLTLIRFPHGTGGESFYQKATPDYAPDFVETDQAHDMSYTICNDPNTLLWLGNQLAMEF
HIPFETRDTDRPVEIVFDLDPPSVKEFHLAIEAAKRIKAILDGLFLTAFIKTSGGKGLQV
YIPLKKNAFTYEQTRQFTAFICQFLCEQAPELFTLERLKKNRGNRLYLDYLQHDAGKTII
APYSPRGNELGLVATPIEWEELNSEECHPSLFTMPAVIKRLKEKGDPFRKMRHHVNDDSF
RQVLYQLQDILPAHKMDTRGH
NT seq
1866 nt
NT seq
+upstream
nt +downstream
nt
atgaaaccgatgcgtttaacgtctgcacatgatattcctgttggagcagactggctgtat
gaattaaaatatgacggctttagggccattcttatttgggaaatagacaccatccattta
gagagcagagcgggaaaacgattaaacaaacaatttcctgaagtcattgatcagtgccag
caactaacaaagcagcttgcaccttttttaccgctgaccctagatggagaattggtcttt
ttactgagtgaacaagaaagcgactttacaaaggttcagcaaagaggccgcctgaaaaac
acagaaaccattcaacgccaggctaagcggtttccatgtcatttgattgcatttgatcta
ttgagatgcaaagggaaatccctcgttgatttaccgctgattgaaagaaaagctgagctg
catgaggtgttccaagcagcaaatcttcctccctccgttcagctgaatcacccctctctt
cttcaaatcatccaaaccgatagcagccctgatgacatgaaaaaaatcatgctgacatat
ttagcggaaggattagttgctaaaaagaagatgagtaaatggcaggaacatacccgatcg
aaagaatggctcaaaatcaaaaattggcggtatgtatctgtcatcgtgactcgttttgat
aaagacaatggctattttcaaggatgtctttatcaagaaacgaatctcatagaggttgtc
caatttaagcatggtttttctaaagaagaagaacaaaccctgcgtaccttatttctaacc
aaaggtcaaatgactgaagcatcacattatgaaatcccaccatccattgtcgcaaagatt
gcctgtatctcttttgatggatcagccttacgagagccccggttttcttcgtttttattc
gatgcagatccagcaacgtgtacctttcaacacatgctcaaacaactttatccactccca
gctatgattgatatcacccacccagagaaaccggttgtacctgcccttcatatcacaaag
gcagattacttactttatttgaggcaagccgcttcctgtttattaccttttttacgtgaa
agacgtcttacgttaatacgctttcctcatggcactggtggagaatctttttatcaaaag
gcaacgcccgattatgcgcctgattttgttgagacagatcaagcgcacgatatgtcttac
acaatctgtaatgatcctaatacgttgctttggcttggtaaccagctggcgatggaattt
catattccttttgaaacgagagatacagatcggcctgtagaaattgtatttgatttagat
ccgccttctgttaaagagtttcacctagcaatagaagcagccaaacgaatcaaggccatt
ttagatggactctttctcaccgcatttattaaaacaagtggtgggaaagggctacaagtt
tatatcccattgaagaaaaatgccttcacatatgaacaaactagacaattcactgcgttc
atctgccaatttttatgcgaacaagcacccgagctgtttacgctagagcgtctaaagaaa
aaccgcggcaaccgtttatatttagactaccttcaacatgatgctggaaaaacaatcatc
gccccgtattccccgagaggaaacgagctcggacttgttgcaacaccgattgaatgggaa
gaattaaatagcgaagaatgtcacccttctttatttacgatgccggctgttataaaacgt
ctaaaggaaaaaggcgatccattccggaaaatgaggcaccatgtgaatgatgattctttt
cgacaagttttatatcagctgcaggacatattaccagctcataaaatggacacacgcggt
cattaa
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