Bacillus pumilus SH-B9: UP12_08580
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Entry
UP12_08580 CDS
T04776
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
bpus
Bacillus pumilus SH-B9
Pathway
bpus03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
bpus00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
UP12_08580
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bpus03400
]
UP12_08580
Enzymes [BR:
bpus01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
UP12_08580
DNA repair and recombination proteins [BR:
bpus03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
UP12_08580
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_ligase_A_M
DNA_primase_S
DNA_ligase_A_C
Motif
Other DBs
NCBI-ProteinID:
AMM97398
LinkDB
All DBs
Position
complement(1748191..1750056)
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AA seq
621 aa
AA seq
DB search
MKPMRLTAAHDVPTGADWVYELKYDGFRVILTWEQNKIHLESRAGKRLNEQFPEMIEQCE
QLRDQFAPFLPLTFDGELVFLLDEQQSDFARVQQRGRLKNKEAIKQQAERFPCHLTVFDL
LRCKGQSLIDLPLMERKKQVQQVFKAAKLPPSVQLEHPSLLQLIHTDTNPEHMKKLMTTY
LAEGLVAKKGTSKWHENTRSKEWLKVKNWRYISVIVTRFDKENGYFQGCIYQDHHLTEVV
QFKHGFSKEEEQTLRMLFQTKGNQIGTSGYEIPPSIVASIACISFDGSALREPRFSSFLL
DTDPAACTFQQMLKQLYPLPAVIDVTHPEKSIVPSLHLNKADYLLYLRQAAPYLLPFLRE
RRLTLIRFPHGAGDEFFYQKSTPDYAPDYVLTDQADDISYTVCNDPQTLLWLGNQLAMEF
HIPFETRDTNRPIEIVFDLDPPSVNEFHLAIEAAKRIKTLLDGLFLTAFIKTSGGKGLQV
YIPLKKNAFTYEETRTFTAFICQFLCEQAPELFTLERLKKKRGNRLYLDYIQHDAGKTII
APYSPRGNELGLVATPLEWDELHQDGLHPSLFTMPAVIERLKEKGDPFRRMRHLVNDDTF
RQVLHRLEDIIPAHKMDIRGH
NT seq
1866 nt
NT seq
+upstream
nt +downstream
nt
atgaaacctatgcgattaacggctgcacatgatgttcctaccggtgcagactgggtgtat
gaattaaaatatgacggctttcgagtcattctgacgtgggagcaaaacaagattcattta
gaaagcagagccggaaaacgattaaacgaacagtttcctgaaatgattgaacagtgcgaa
caattaagggatcagtttgctccttttttacctctgacgtttgatggagaattggtcttt
ttactggatgaacagcaaagcgattttgcgagggttcagcaaagaggcagattaaaaaac
aaagaggcgattaagcaacaggctgagcggtttccatgtcatttgaccgtatttgatcta
ttaagatgcaaagggcaatctctaattgatttgccgttgatggaaaggaaaaaacaggta
cagcaagttttcaaagcagcaaaacttccgccatctgttcagcttgagcacccttccctt
cttcaactcattcatacagacacaaatcctgaacatatgaaaaagctgatgacgacgtat
ttagcagaaggactcgttgcgaaaaaagggacgagtaaatggcacgagaatacacggtca
aaagaatggctgaaagtcaaaaactggcgatatatctctgtcattgtgactcgttttgat
aaagaaaatggctacttccaaggctgtatttatcaagatcatcatctcaccgaggttgtc
caattcaagcatggattttctaaagaagaagaacaaacgctgcgtatgctttttcaaaca
aaaggcaatcaaatagggacatcaggatatgaaatcccaccttctatcgtcgcgagcatt
gcttgtatctcctttgatgggtccgccttaagagagccgcgtttttcttcctttttactt
gatactgacccagcggcgtgtacgtttcagcaaatgctcaaacagctgtatccgctccct
gctgtgattgacgtcactcatcctgaaaaatcgattgtgccgtctcttcatctgaacaag
gcagattacttgctttatttaagacaagccgctccctacctcttgccctttttacgtgaa
agacggctgactttaattcggtttcctcatggcgccggggatgaatttttttatcaaaaa
tcgacacctgattatgcgccagattatgtgttgaccgatcaagctgatgatatttcatac
actgtctgtaatgaccctcagacgcttctttggctcggtaaccagcttgcaatggaattt
catattccttttgaaacaagagatacaaatcggccgatcgaaatcgtctttgatttagac
ccgccatctgttaacgagtttcatctagccatagaagctgctaagcgaatcaaaacgctt
ttagacggtctctttcttacagcctttattaaaacaagcggtggtaaaggactgcaagtt
tatattccattaaagaaaaatgccttcacatacgaagaaacgagaacatttaccgcgttt
atatgccaatttttatgtgaacaagcacctgagctatttactctggaacgtcttaagaaa
aaacgcggcaatcgcttgtatttagactatattcagcacgatgctggaaaaacaatcatt
gcgccctattcaccaagaggaaatgagcttgggcttgtagcgacaccgcttgaatgggac
gaactccatcaagatggacttcacccttctttgtttaccatgccagctgtgatagagcgt
ctaaaggaaaaaggcgatccattccgccgcatgagacaccttgtaaatgatgacactttc
agacaagttttgcaccggcttgaggacattatcccggcacataagatggacatacgcggt
cattaa
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