Paraburkholderia phytofirmans PsJN: Bphyt_0116
Help
Entry
Bphyt_0116 CDS
T00765
Name
(GenBank) excinuclease ABC, B subunit
KO
K03702
excinuclease ABC subunit B
Organism
bpy
Paraburkholderia phytofirmans PsJN
Pathway
bpy03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
bpy00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Bphyt_0116
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bpy03400
]
Bphyt_0116
DNA repair and recombination proteins [BR:
bpy03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Bphyt_0116
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
Bphyt_0116
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrB_inter
Helicase_C
UvrB
ResIII
DEAD
AAA_19
AAA_30
UB2H
AAA_22
P-loop_SecA
Kinesin
SLFN-g3_helicase
DUF5085
DUF87
Motif
Other DBs
NCBI-ProteinID:
ACD14557
UniProt:
B2SZZ6
LinkDB
All DBs
Position
1:132757..134736
Genome browser
AA seq
659 aa
AA seq
DB search
MPTGTFILHSAYTPAGDQPEAIARLIEGIEEGAKHQTLKGITGSGKTFTMANVIHRLNRP
TLMLAPNKTLTAQLYEEMKQFFPENAVEFFVSYYDFFQPEVYMPGSDRFIQKDSAINDHL
ERLRLSTTKSLIERRDVIVVASVSSIYGLGDPNGYRELQIALSRGISFRPRELIRRLVRL
QYERVERTLKRGTFRVRGDAVDIFPADSEYRAVRVELLDDSVQSVHWIDPATGAQLGEID
HYLVSPKTLFATPRNRVNSATIKILAEMEARVAELNSENRLVEADRLYERITGDVEMMRE
LGYCPGMENYSCYLNGRDPALPPNTLLDYLPTDGLLFVDESHVMVPQISAMYKGDQSRKD
TLIDYGFRLPSSKNNRPLSFEEFEKVKPQTIFVSATPGNYELAISKGRFVSQIIRPTGLL
DPEVEVRTTDGCIDDLLVEIKKCVKNKNRVLVTTLTKRAAEELNDFMTERGIRSRYLHAD
IKTEDRIEIINGLREGEFDVLIGISLLREGLDIPEAALVAILDADHAGFLRSAQALIQMI
GRVARNEEGRAILYADGITPAMKQAMDETGSRRKKQIEFNEENGIVPASSVRKLASEHVE
PEENASVHSVAFCKNLSDLCDQITKKEERLLEFTDAGDEKKIEDTRDQLNGLYRQFIFM
NT seq
1980 nt
NT seq
+upstream
nt +downstream
nt
atgccaactggtactttcatcttgcactccgcctatactccggcaggtgatcaacccgaa
gcgatagcgcgactgatagaaggtatagaggaaggggcgaagcaccaaaccttgaagggc
atcacgggttcgggcaagacctttacgatggcaaacgtcattcaccgcctcaatcgtccg
accttgatgctggctcccaacaagacgttgacggcgcagctttacgaggagatgaagcag
ttctttcctgaaaatgcggttgaattctttgtttcctactatgatttctttcagcccgaa
gtgtatatgccgggcagtgatcgttttattcagaaggactcggcgatcaatgatcatctt
gaacgcttgcgcctgtccacgacgaagtctctgattgaacgtcgtgacgtgatcgtcgtc
gcttcggtgtcttcaatatatggactcggggatcccaatgggtatcgcgaactgcagatt
gcgctgtctcgaggaattagtttccgacccagggaactcattcgtcgcctcgttcgactg
cagtacgagcgtgtcgaacgcacgctcaagcgcgggacgttccgggttagaggcgatgca
gttgacatctttccggcggattctgaatatagggccgtccgcgtggagttgctcgatgat
tctgtgcaatccgttcactggatagatcctgccacgggagcccaattgggggaaattgat
cattatctggtttctccgaagacgctttttgcaacacccaggaacagggtcaactcggcc
acgatcaaaatactcgcagaaatggaagcgcgagttgctgagctcaatagcgaaaaccgg
ctcgtagaagcggatcgattgtacgagcggattacaggtgatgtcgaaatgatgcgggag
cttggctattgccccgggatggagaactattcgtgttatctgaacggccgggaccctgcg
ctgcccccaaacaccttgctcgactatctgccaacggatggcctgctgtttgtcgacgag
tcccatgtgatggtcccgcaaatctcggcaatgtataagggtgaccagagtcgcaaagat
acgctgatcgactacggcttccggctgccgtcatcaaaaaacaatcgtccgttaagtttt
gaggaatttgaaaaggtcaaacctcagactatctttgtttcggcgacccccggaaactac
gaattggcgatttcgaaaggccgatttgttagccaaattatcaggccgaccgggttgctg
gatccagaagtggaagtgcggacaacggatggatgtatagacgatctgctcgtcgagata
aaaaaatgcgtgaaaaacaaaaatcgggtcctggtcaccacgctgacaaaaagagcagcc
gaggagctcaacgattttatgacagagcggggcattcgttcccggtatctgcacgctgac
ataaagaccgaagatcgcatagaaattataaatgggcttcgcgagggggaatttgatgtg
ttgatcgggattagccttttgcgggagggcttggatatcccggaggctgctttagtggcc
attctcgatgcggatcatgcaggcttcctgcgctcggcacaggcccttatccagatgatc
ggccgcgttgcccgcaacgaagaaggccgggcgatcctgtatgccgatggcatcacgccg
gcgatgaaacaggcaatggatgagacaggcagccgaagaaagaagcagatcgaatttaat
gaagaaaacggaatcgtgccagcttcgtctgtgcgaaagctggcttccgaacacgttgaa
ccggaagagaacgcttcggttcattcggtggctttctgtaaaaatctttcagacctctgt
gaccagattacgaaaaaggaggagaggttgcttgaattcacggatgctggtgacgaaaag
aaaattgaagatacccgcgatcagttgaacgggctttatcgtcaatttatcttcatgtag
DBGET
integrated database retrieval system
