Paraburkholderia phytofirmans PsJN: Bphyt_1858
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Entry
Bphyt_1858 CDS
T00765
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
bpy
Paraburkholderia phytofirmans PsJN
Pathway
bpy03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
bpy00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
Bphyt_1858
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bpy03400
]
Bphyt_1858
Enzymes [BR:
bpy01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
Bphyt_1858
DNA repair and recombination proteins [BR:
bpy03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
Bphyt_1858
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
ACD16266
UniProt:
B2T3V5
LinkDB
All DBs
Position
1:2085683..2088505
Genome browser
AA seq
940 aa
AA seq
DB search
MNDRLDLYNRKRRFDDTPEPAGTRARRKPAGRKTTRQAAGEALSYVIQEHDARRLHYDFR
LELNGTLLSWAVPKGPSLDPSVKRLAVHVEDHPVEYGSFEGEIPPGNYGAGSVIVWDRGT
WEPVGGAAEAARSYAAGKLKFHLHGEKLHGGWTLVRSHMRGSGDKEQWLLIKERDDEARD
ESDYDILKKRPGSVLSGSASVAKGEKTTTAASKTARKTAASDAKSTAKRGGKSSAKAASS
TRADPRRPDIVATRNTQSLRELAATPSIEGAVKARLPTTFKPQLATLVDAAPPGDEWSYE
IKFDGYRVLARIDRDAKGSAVKVFTRAGNDWTAKFSKQVKAFEQLGIESAWLDGEAVVLD
PNGVPNFQALQNAFDANRPQDIIVYLFDIPFLNGYDLRGVPLEQRRAILHALMEDVDDSV
LRFSNNFDFSAEDLLRSACDMALEGIIGKRRDSGYLSGRSSTWIKLKCRRRQEFVIGGYS
EPSGSRAAFGALLLGVYDSKGNLNYAGRVGTGFDAALLRSVKKELDAHATKRMPFAAVPR
ERSRTPVHWVEPVLVAECNFAEWTSDGIVRQASFVSLRNDKPARQIVKETPRQGADVQQQ
TDSISDDAPKKRAARKTSGSNVAAAGKTTAAKPKTAKSPTTAPPAEVAGVRISHPDRVID
KSSGARKIDLVQYYESVAEWMLPHLKDRPVSLVRAPEDIGGELFFQKHSQKLSIPNVTQH
PGLDPGHPPLITVDTIKALVGAAQMGTVEFHTWNAVASNIEKPDRAVFDLDPDAALGWER
MIEAAQLTRSLLEELGLTSFCKTSGGKGLHVVVPLAKQAGWDEVKDFSQAVAQHMAATLP
KYFSAKMGAQNRKQKIFVDYLRNNRGSSTVAAFSARARPGLGVSVPLAWDEVAGTTGGDQ
WTIENLHERLAELKSDPWADYAKTRQRITAAMKKRLNDAQ
NT seq
2823 nt
NT seq
+upstream
nt +downstream
nt
atgaacgaccgactcgatctctacaaccgcaagcgccgcttcgacgacacgccggagccg
gcgggcacgcgcgccaggcgcaaaccagccggccggaaaacgacccgccaggcagccggc
gaggcgctctcatacgtgatccaggaacacgacgcccggcgcttgcactacgacttccgg
ctggaactgaacggcacactcctgtcgtgggcggtgcccaaagggccgagcctcgatccc
tcggtgaaaaggctggcagtgcatgtcgaggatcatccggtcgaatacggttcgttcgaa
ggggaaatcccgcccggcaactacggtgcgggcagcgtgatcgtgtgggatcgcggcacc
tgggaaccggttggcggcgcggcggaggcggcgcgttcctacgcggccggcaaactcaag
ttccatttgcacggcgaaaagctgcacggcggctggacactggtgcgcagccatatgcgc
ggcagcggcgacaaggagcagtggctgctgatcaaggaacgcgacgacgaagcgcgcgat
gagagcgactacgacattctgaagaagcgcccgggcagcgtgctcagcggcagcgcctcg
gtggctaaaggcgaaaaaacgacgacagcggcatctaagaccgcgcgcaaaaccgcggcc
tctgatgcgaagtccaccgcaaaacgaggcggcaaaagcagcgcgaaagccgcttcatcc
acccgcgcggatcccagacgaccggatatcgtggcgacgcgcaacacgcagtcgctacgc
gaactcgccgccacgccctcgatcgagggcgcggtgaaagctcgcttgcccacgaccttc
aaaccgcaactggcgacgctcgtcgacgccgcgccgcccggcgacgaatggtcgtacgaa
atcaagttcgacggttaccgcgtgctggcccgaatcgatcgggacgcgaaggggagcgcc
gtcaaagtattcacccgcgccggcaacgactggaccgcgaaattcagcaaacaggtcaag
gcgttcgaacagctcggaatcgaaagcgcgtggctcgacggcgaagccgtggtgctggac
ccgaacggcgtgccgaattttcaggcgctgcagaacgctttcgatgcgaaccggccgcaa
gacatcatcgtctacctgttcgatataccgttcctgaacggctacgacctgcgcggcgtg
ccgctcgaacagcgtcgcgcgattctgcacgctctgatggaagacgtcgacgatagcgtg
ctgcgtttctcgaacaatttcgacttcagcgcggaagacctgctcagaagcgcgtgcgac
atggcgctggaaggcatcatcggcaagcggcgcgatagcggctatctgtcgggccgttcg
tcgacgtggatcaagttgaaatgccgccggcgtcaggagttcgtgataggcggctattcg
gaaccgtccggaagtcgtgcggcattcggcgcgctgctgctcggcgtctacgacagcaaa
ggcaatttgaattacgcggggcgcgtcggcaccggcttcgacgcggcgttgctgcgctcg
gtcaagaaagaactcgacgcgcacgcgaccaagcgcatgccgtttgcggccgtgccgcgc
gagcgcagccgcacgccggtgcattgggtcgaaccggtgctcgtagccgaatgcaatttc
gcggaatggacgagtgacggcatcgtgcgtcaggcgtcgttcgtgagtttgcgcaatgac
aagccggcgcgccagatcgtcaaggaaacacctcgccagggagccgacgtgcaacagcaa
accgattccatctccgacgacgcgccgaagaaacgcgcggcgcggaaaacttctggtagt
aacgtggccgcagccggaaaaaccacagccgccaaacccaaaaccgcaaaatcacccacc
accgcaccgcccgccgaagtcgccggcgtgcgcatctcgcatcccgatcgcgtcatcgac
aaaagcagcggtgcgcgcaagatcgatctcgtgcagtactacgagtcggtggccgaatgg
atgctgccacatctgaaagaccgtccggtgtcgctggtgcgtgcgcccgaggacatcggc
ggcgagctgttttttcagaagcacagccagaagctgtcgattccaaatgtcacgcagcat
ccgggcctcgatcccggtcatccgccactgatcaccgtcgataccatcaaggcgctggtc
ggcgcggcgcaaatgggcaccgtcgaatttcacacgtggaatgcggtcgcatcgaatatc
gaaaaaccggaccgcgcagtcttcgacctagaccccgatgcagcgctaggttgggaacgc
atgatcgaagccgcgcaactgacgcgttcgctgctcgaggaactcggcctcacatcgttc
tgcaagacgagcggcggcaagggcttgcatgtggtcgtgccgctcgcgaaacaggccggc
tgggacgaagtaaaggacttttcgcaagccgtcgcgcagcatatggctgcgacgctgccc
aagtacttcagcgcgaagatgggcgcgcagaaccgcaagcagaaaatcttcgtcgactat
ctgcgcaacaaccgcggctccagcacagtcgccgcattttcggcgcgggcgcgtccgggc
ctcggtgtatcggttccgcttgcgtgggacgaagtcgccggcaccacgggcggcgatcaa
tggaccatcgagaatctgcacgagcgcctcgccgaactcaaaagcgacccgtgggcggac
tatgcaaagacgcgtcagcgcatcaccgcggccatgaaaaaacgtctgaatgacgcgcaa
taa
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