Burkholderia pyrrocinia: ABD05_15930
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Entry
ABD05_15930 CDS
T03962
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
bpyr
Burkholderia pyrrocinia
Pathway
bpyr03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
bpyr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
ABD05_15930
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bpyr03400
]
ABD05_15930
Enzymes [BR:
bpyr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
ABD05_15930
DNA repair and recombination proteins [BR:
bpyr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
ABD05_15930
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
MFD_D3
ResIII
UB2H
ERCC3_RAD25_C
Glyco_tran_WecG
SNF2-rel_dom
Motif
Other DBs
NCBI-ProteinID:
AKM01553
UniProt:
A0A0G3WUK1
LinkDB
All DBs
Position
1:3493027..3496497
Genome browser
AA seq
1156 aa
AA seq
DB search
MPDNDSNPSASPVARVKPGQRFAFDGAHGSADALAIARYLADNRQDVPLLAVICANAVDA
QRLSQEIRYFSPDARVRLLPDWETLPYDTFSPHQDLVSERLATLHDLGEGRCDILLVPAT
TALYRMPPASFMAAYTFAFAQGERLDEAKLKAQLTLAGYEHVSQVVRPGEYCVRGSLIDL
YPMGSPLPYRIDLFDDQVDSIRAFDPDTQRSLYPVRDVRLLPGREFPFDEAARTAFRSRW
RETFEGDPSRAPIYKDIGNGVPSAGIEYYLPLFFDETATLFHYLPQDAHLVFTGDLEASI
RRFTADTKQRHAFLSHDRERPILEPQRLFLSDEDFFAFAKPFARVVLPAQPAGGWATALP
ELTVDRHSDDPLASLRTFVESSGKRVLLTVESAGRRETILQLLAEHHLRAASNDHFAGWL
ASDERFALGVAPLSSGFAVPGEGYAIVTETELYGALGRRAGRRRQEQASNVDAMVRDLSE
LKVGDPVVHAQHGIGRYMGLVSMDLGEGETEFLHLEYSGDSKLYVPVAQLHVISRYSGAD
PDSAPLHALGSGQWERAKRKAAQQIRDTAAELLNLYARRAAREGHAFALDPRDYVKFAES
FGFEETPDQAAAIAAVIGDMTSGKPMDRLVCGDVGFGKTEVALRAAFIAVMGGKQVALLS
PTTLLAEQHTQTFVDRFADWPVRIVELSRFKTTKEVNTAIAQINEGSVDIVIGTHKLLSS
DVQFKRLGLVIIDEEHRFGVRQKEALKALRAEVDVLTLTATPIPRTLGMALEGLRDFSVI
ATAPQKRLAIKTFVRREEESVIREAMLRELKRGGQVYFLHNEVETIENRKAMLEELVPEA
RIVIAHGQMHERELERVMRDFVAQRANVLLCTTIIETGIDVPSANTIIMHRSDKFGLAQL
HQLRGRVGRSHHQAYAYLLVHDPQALTKQAQRRLEAIQQMEELGSGFYLAMHDLEIRGTG
EVLGDKQSGEIHEIGFQLYTDMLNDAVKALKNGKEPDLTAPLAATTEINLHAPAILPADY
CADVQERLSLYKRLANCEHGDAIDGIQEELIDRFGKLPPQAHALVETHRLRIAAKPLGIV
KIDASEAAIGLQFEPNPPIDPMRIIDMVQKHRHIKLAGQDKLRIETRSPDLAIRVSTIKE
TLRALAPKQGAAAAAR
NT seq
3471 nt
NT seq
+upstream
nt +downstream
nt
atgccagataacgattccaacccgtccgcctcgcccgttgcccgcgtcaaacccggccag
cgtttcgccttcgacggcgcgcacggttccgccgacgcgctcgccatcgcccgttatctc
gccgacaaccgccaggacgtgccgctcctcgcggtgatctgcgcgaacgcggtcgacgcg
cagcggctctcgcaggaaatccgctacttctcgcccgacgcgcgcgtgcgcctgctgccg
gactgggaaacgctgccgtacgacacgttctcgccgcaccaggacctcgtgtccgagcgg
ctcgcgacgctgcacgacctcggcgaaggccgctgcgacatcctgctcgtgcccgcgacc
accgcgctgtaccggatgccgcccgcgtcgttcatggccgcgtacacgttcgcgttcgcg
cagggcgaacggctcgacgaggcgaagctgaaggcacagctcacgctggccggctacgag
catgtgagccaggtcgtgcgccccggcgaatactgcgtgcgcggttcgctgatcgacctg
tacccgatgggttcgccgctgccgtaccggatcgacctgttcgacgaccaggtcgactcg
atccgcgcattcgaccccgacacgcagcgcagcctgtacccggtgcgcgacgtgcggctg
ctgcccggccgcgagtttccgttcgacgaagccgcgcgcacggccttccgcagccgctgg
cgcgagactttcgaaggcgatccgagccgcgcgccgatctacaaggacatcggcaacggc
gtgccgtcggccggcatcgagtattacctgccgctgttcttcgacgaaacggccacgctg
ttccactacctgccgcaggacgcgcacctcgtgttcaccggcgatctcgaagcctcgatc
cgccgcttcacggccgatacgaagcagcgccacgcgttcctgtcgcacgatcgcgagcgg
ccgatcctcgagccgcagcgcctgttcctgtccgacgaggatttcttcgcattcgcgaag
ccgttcgcacgcgtcgtgctgcccgcgcaaccggccggcggctgggcgaccgcgctgccc
gagctcaccgtcgaccggcattccgacgatccgctcgcgtcgctgcgcacgttcgtcgaa
tcgtcgggcaagcgcgtgctgctgaccgtcgaatcggccggccgccgcgagacgatcctg
caactgctcgccgagcatcacctgcgcgccgcgtcgaacgaccacttcgcgggctggctc
gcgagcgacgaacgcttcgcactcggcgtcgcgccgctgtcgagcggcttcgcggtgccg
ggcgaaggttatgcgatcgtcaccgaaaccgagctgtacggcgcgctcggccgccgcgcg
ggccgccgccggcaggaacaggccagcaacgtcgacgcaatggtgcgcgacctgtcggag
ctgaaggtcggcgacccggtcgtccacgcgcagcacggcatcggccgctacatgggcctc
gtgtcgatggatctcggcgaaggcgagaccgaattcctgcatctcgaatactcgggcgac
agcaagctctacgtacccgtcgcgcaattgcacgtgatctcgcgctacagcggcgccgat
cccgacagcgcgccgctgcacgcgctcggctccggccagtgggagcgcgcgaagcgcaag
gccgcgcaacagatccgcgatacggccgccgagctgctgaacctgtacgcgcgccgcgcg
gcccgcgaaggccatgcgttcgcgctcgacccgcgcgactacgtgaaattcgcggaaagc
ttcggcttcgaggagacgcccgaccaggccgcggcaatcgcggccgtgatcggcgacatg
acgagcggcaagccgatggaccgcctcgtgtgcggcgacgtcgggttcggcaagaccgag
gtcgcgctgcgcgccgcgttcatcgcggtgatgggcggcaagcaggtcgcgctgctgtcg
ccgaccacgctgctcgccgagcagcacacgcagaccttcgtcgaccgcttcgcggactgg
ccggtgcggatcgtcgagctgtcgcgcttcaagaccacgaaggaagtgaacacggcgatc
gcgcagatcaacgaaggcagcgtcgacatcgtgatcggcacgcacaagctgctgtcgtcg
gacgtgcagttcaagcgcctcggcctcgtgatcatcgacgaggagcaccgcttcggcgtg
cgccagaaggaagcgctgaaggcgctgcgcgcggaagtcgacgtgctgacgctcaccgcg
acgccgatcccgcgcacgctcgggatggcgctcgaagggctgcgcgatttctcggtgatc
gcaaccgcgccgcaaaagcggctcgcgatcaagaccttcgtgcgccgcgaggaggaaagc
gtgatccgcgaggcgatgctgcgcgagctgaagcgcggcggccaggtgtatttcctgcac
aacgaggtcgagacgatcgagaaccgcaaggcgatgctcgaggaactcgtgcccgaggcg
cgcatcgtgatcgcgcacggccagatgcacgagcgcgagctcgagcgcgtgatgcgcgat
ttcgtcgcgcagcgcgcgaacgtgctgctgtgcacgaccatcatcgaaaccggcatcgac
gtgccgagcgcgaacacgatcatcatgcaccggtcggacaagttcggcctcgcgcagctc
caccagttgcgcggccgcgtcggccgctcgcatcatcaggcctatgcgtacctgctggtc
cacgatccgcaggcgctgaccaagcaggcgcagcggcggctcgaggccatccagcagatg
gaggaactcggctcgggcttctatctcgcgatgcacgacctcgagatccgcggcaccggc
gaggtgctcggcgacaagcagtcgggcgagatccacgagatcggcttccagctttatacg
gacatgctgaacgacgcggtgaaggcgctgaagaacggcaaggagcccgacctcaccgcg
ccgcttgccgcgacgacggaaatcaacctgcatgcgcccgcgatcctgccggccgactac
tgcgcggacgtgcaggagcggctgtcgctgtacaagcgtctcgcgaactgcgagcacggc
gacgcgatcgacggcatccaggaggaactgatcgaccgcttcggcaagctgccgccgcag
gcgcacgcactcgtcgagacgcaccggctgcgcatcgccgcgaagccgctcggcatcgtg
aagatcgacgcgagcgaggccgcgatcgggctgcagttcgagccgaatccgccgatcgat
ccgatgcggatcatcgacatggtgcagaaacaccggcacatcaagctcgcgggccaggac
aagctgcgcatcgaaacgcgctcgcccgatctcgcgatccgcgtgtcgacgatcaaggaa
acgttgcgcgcgctcgcgccgaagcagggagcggccgccgcggcgcgctga
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