Bradyrhizobium quebecense: J4P68_0009520
Help
Entry
J4P68_0009520 CDS
T07890
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
bqb
Bradyrhizobium quebecense
Pathway
bqb03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
bqb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
J4P68_0009520 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bqb03400
]
J4P68_0009520 (ligD)
Enzymes [BR:
bqb01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
J4P68_0009520 (ligD)
DNA repair and recombination proteins [BR:
bqb03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
J4P68_0009520 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
Motif
Other DBs
NCBI-ProteinID:
UGY04949
LinkDB
All DBs
Position
complement(1926480..1929104)
Genome browser
AA seq
874 aa
AA seq
DB search
MSLRNLTTYRKKRDFEKTNEPSGDVKVAPGKQRRFVIQKHDATRLHYDFRLEFDGVFKSW
AVTRGPSLDPHDKRLAVEVEDHPLDYGDFEGTIPEGQYGGGTVQLWDRGTWESDDPERGF
KKGDLKFTLHGDKLHGSWVLVRMKNDRFGGKRPNWLLIKHRDEYAVDGNGEAVLGEDRSV
ASGRSMAEIAAGKGRAPKPFMLAKGNGKAKADAVWQTNHGMAANARARTKAPAPREKLKA
QLKTPPKARPKQVAEMPDFVSPQLCTVVESPPNGAGWCHEIKFDGYRVQLRIEDGKAVVR
TRKGLDWTDKFGAIVKEAGKLPDALIDGEIVALDENGIPHFSALQAALSDGKTEKLIFYA
FDLLFAGSEDLRPLPLSERKARLQALLAARKGKLIRYVEHFEERGDAVLESARKLGLEGI
VSKRLHGAYRSGRSDDWTKAKIRAGHEVVIGGWKTTNGKFRSLMAGVYRGDHLVFVGIVG
TGFGQDTVRRIMPALKAAASDTSPFGGKDAPKKTRDVHWLKPELVAEIEFAGWTDAGNIR
QAAFKGLRQDKPAREVEAERPVVTRVVKPMAKGKSSAVMGVAISHPDKALWPDAGDGEPV
TKLDLANYFEAVGTWMIGYLKGRPCSIVRAPDGIKGETFFQRHAMAGTSKLLKLAKVSGD
RKPYLQIDQVEGLAAVAQLGGLELHPWNCAPDAYDTPGRLVFDLDPAPDVAFSDVIGAAK
DMRQRLTAVGLASFCKTTGGKGLHVVAPLLAGARDKVTWKEAKAFAQAICQWMEQDDPER
YLINMSKAKRTGKIFLDYLRNDRLSTAVAVLSPRARPGATVSMPLTWTQVRGDLDPKKYT
VRSVPALLAKSKAWDGYEDAASSIKAAMKKLAAE
NT seq
2625 nt
NT seq
+upstream
nt +downstream
nt
gtgtcgctgagaaatctcaccacctatcgcaagaagcgcgacttcgagaagaccaatgag
ccgtcgggcgacgtcaaggtggcgcccggcaagcagcggcgcttcgtcatccagaagcat
gacgcgacgcggctgcattatgatttcaggctggagttcgacggcgtgtttaagtcgtgg
gcagtgacgcgcgggccctctctcgatccgcacgacaagcggctggcggtcgaggtcgag
gatcatccgctcgactatggcgacttcgaaggcaccattccggaaggccagtatggcggc
ggcacggtgcagctctgggatcgcggcacctgggaatcggacgatcccgagcgcggcttc
aagaagggcgacctgaaattcacgctgcacggcgacaagctgcacggcagctgggtgctg
gtgcggatgaagaacgaccgcttcggcggcaagcgtcccaactggctattgatcaaacac
cgcgatgaatacgctgtggatggcaatggcgaagcggtcctgggcgaggaccgctcggtc
gcctccggccgttcgatggcagagatcgcagccggcaagggccgggcgccgaagccgttc
atgctggccaagggcaacggcaaagccaaggcagatgcggtctggcaaaccaatcacggc
atggccgccaacgcgcgcgccaggaccaaggcgccggcgcccagggaaaaactcaaggcg
caattgaagacgccgccaaaggcgaggccgaagcaggtggcggagatgccggacttcgtt
tcgccgcagctctgcaccgtggtcgagagtccgcccaatggcgcgggctggtgccacgag
atcaaattcgatggttaccgcgtgcagcttcgcatcgaggacggcaaggccgtggtgagg
acccgcaaagggctcgactggaccgacaagttcggcgcgatcgtgaaggaggccggcaaa
ctgccggatgcgttgatcgacggcgagatcgtcgcgctcgacgagaacggtatcccccat
ttttcggcgctgcaggcggcgctgtccgacggcaagactgagaagctgatcttctacgcg
ttcgatctgctgtttgccggctccgaggatctccggccgctgccgctcagcgagcgcaag
gcgcggctgcaggcgctgctcgccgcgcgcaagggcaagctgatccgctatgtcgagcat
ttcgaggagcgtggcgacgccgtgctggagtccgcgcgcaagctcgggctggaaggcatc
gtctccaagcggctccacggcgcctatcgctccgggcgctcagacgactggacgaaagcg
aaaatccgcgccggccatgaagtagtgatcggtggctggaagaccaccaacggcaaattc
cgctcgctgatggcgggcgtctatcgcggcgatcatctggtctttgtcggcatcgtcggc
accggcttcggccaggacacggtccgccgcatcatgccggcgctgaaggcggcggcgtca
gacaccagcccgttcggcggcaaggatgcgccgaagaagacccgcgacgtgcactggctg
aagcctgagctggtcgccgagatcgagttcgccggctggaccgacgccggcaatatccgc
caggcggcgttcaagggcctgcggcaggacaagccggcgcgcgaggtcgaggccgaacgg
ccggtcgtaaccagagtggtgaagccgatggccaaaggaaaatccagcgcggtgatgggc
gtcgccatctcccatccggacaaggcgttgtggcccgatgccggcgacggcgagccggtc
accaagctcgatctcgccaattacttcgaggcggtcggcacatggatgatcggctacctc
aagggccggccgtgctcgatcgtgcgcgcccccgatggcatcaagggcgagacgttcttc
cagcgccacgcgatggccggcacgtcgaagctcctgaagctcgccaaggtctccggcgac
cgcaaaccctatctccagatcgaccaggtcgagggcctcgcggcggtggcgcagctcggc
ggcctcgagctgcatccctggaattgcgcgcccgatgcctatgacacgccgggccggctg
gtgttcgatctcgatcccgcgcccgatgtcgcgttctccgatgtgatcggggccgccaag
gacatgcgccagcggctcacggcagtcggcctcgcgagcttctgcaagaccaccggcggc
aagggccttcatgtcgtggcgccgctgctcgcaggtgccagagacaaggtgacatggaag
gaggccaaggcgttcgcgcaagcgatctgccagtggatggagcaggatgaccccgagcgt
tatctgatcaacatgtccaaggccaagcgcaccggaaagatcttcctcgactacctgcgc
aacgaccggctttcgaccgcggtcgcggtactgtcgccgcgggcgcggcccggcgccacg
gtgtcgatgccgctgacctggacccaggtgcgcggcgacctcgatccgaagaaatacacg
gtacggtcggtgccggcgctgcttgcgaagagcaaggcgtgggacggctatgaggatgcg
gcctcgtcgatcaaggcggcgatgaagaagctcgcggccgagtag
DBGET
integrated database retrieval system
