Bacillus amyloliquefaciens LL3: LL3_00110
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Entry
LL3_00110 CDS
T01835
Symbol
rpoB
Name
(GenBank) RNA polymerase (beta subunit)
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
bql
Bacillus amyloliquefaciens LL3
Pathway
bql03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
bql00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
LL3_00110 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bql03021
]
LL3_00110 (rpoB)
03400 DNA repair and recombination proteins [BR:
bql03400
]
LL3_00110 (rpoB)
Enzymes [BR:
bql01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
LL3_00110 (rpoB)
Transcription machinery [BR:
bql03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
LL3_00110 (rpoB)
DNA repair and recombination proteins [BR:
bql03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
LL3_00110 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_2
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
Motif
Other DBs
NCBI-ProteinID:
AEB61665
LinkDB
All DBs
Position
117371..120616
Genome browser
AA seq
1081 aa
AA seq
DB search
MGDFPIMTDTGTFIINGAERVIVSQLVRSPSVYFSGKVDKNGKKGFTATVIPNRGAWLEY
ETDAKDVVYVRIDRTRKLPVTVLLRALGFGSDQEILDLIGENEYLRNTLDKDNTENSDKA
LLEIYERLRPGEPPTVENAKSLLDSRFFDPKRYDLANVGRYKINKKLHIKNRLFNQRLAE
TLVDPETGEILAEKGQILDRRTLDKVLPYLENGIGFRKLYPNGGVVEDEVMLQSIKIYAP
TDAEGEQTINVIGNAYIEEAIKNITPADIISSISYFFNLLHGVGDTDDIDHLGNRRLRSV
GELLQNQFRIGLSRMERVVRERMSIQDTNTITPQQLINIRPVIASIKEFFGSSQLSQFMD
QTNPLAELTHKRRLSALGPGGLTRERAGMEVRDVHYSHYGRMCPIETPEGPNIGLINSLS
SFAKVNRFGFIETPYRRVDPETGKVTPRIDYLTADEEDNYVVAQANAKLSDDGSFLDDSI
VARFRGENTVVARNRVDYMDVSPKQVVSAATACIPFLENDDSNRALMGANMQRQAVPLMQ
PEAPIVGTGMEYVSGKDSGAAVICKHPGIVERVEAKNVWVRRYEEIDGQKVKGNLDKYSL
LKFVRSNQGTCYNQRPIVSVGDEVVKGEILADGPSMELGELALGRNVMVGFMTWDGYNYE
DAIIMSERLVKDDVYTSIHIEEYESEARDTKLGPEEITRDIPNVGEDALRNLDDRGIIRI
GAEVNDGDLLVGKVTPKGVTELTAEERLLHAIFGEKAREVRDTSLRVPHGGGGIIHDVKV
FNREDGDELPPGVNQLVRVYIVQKRKISEGDKMAGRHGNKGVISKILPEEDMPYLPDGTP
IDIMLNPLGVPSRMNIGQVLELHMGMAARYLGIHIASPVFDGAREEDVWETLEEAGMSRD
AKTVLYDGRTGEPFDNRVSVGIMYMIKLAHMVDDKLHARSTGPYSLVTQQPLGGKAQFGG
QRFGEMEVWALEAYGAAYTLQEILTVKSDDVVGRVKTYEAIVKGDNVPEPGVPESFKVLI
KELQSLGMDVKILSSDEEEIEMRDLEDEEDAKQADGLALSGDEAPEETASPDVERDAVTK
E
NT seq
3246 nt
NT seq
+upstream
nt +downstream
nt
atgggtgatttccctattatgacagataccggtacttttatcatcaacggtgcagaacgt
gttatcgtatctcagcttgttcggtctccaagtgtatatttcagtggtaaagtagacaaa
aacggtaaaaaaggttttaccgcgactgtcattccaaaccgtggcgcatggttagaatac
gaaactgatgcgaaagatgttgtgtatgtccgcattgatcgcacacgtaagttgccggtt
acggttcttttgcgtgctctcggcttcggttccgaccaagagattctcgatctcattgga
gagaacgaatatctccgcaatacactggataaggacaacactgaaaacagtgacaaagcg
cttcttgaaatctatgagcgccttcgtcccggagagccgcctacagtagaaaacgcaaag
agcttgctggattcccgtttcttcgatccgaagcgatacgaccttgcgaatgtaggacgc
tataaaattaataaaaagcttcatatcaagaaccgcctgtttaaccagcgccttgcagag
acactggtggatcctgaaaccggtgaaattctcgctgaaaaagggcagattcttgacaga
agaacacttgataaagtactgccatacttagaaaatggaatcggcttcagaaaactttat
cctaacggcggcgtagtcgaggatgaagtgatgcttcaatccattaaaatctatgctcct
actgatgcagaaggagagcagacgatcaacgtgatcggcaatgcttacattgaagaggcg
attaaaaacattacgcctgctgatattatttcttctatcagctacttcttcaacctcctg
cacggagtgggcgacactgatgatatcgaccatctcggaaaccgccgtctgcgttctgta
ggtgaactcctgcaaaaccaattccgtatcggtttaagccggatggaacgtgtcgtacgt
gaaagaatgtcaattcaagacacaaacacaatcacgccgcagcagctgattaacatcaga
cctgttattgcgtctattaaagagttcttcggaagctcacagctttctcaattcatggat
cagacgaacccgcttgctgaattgacgcataaacgccgtctgtcagctctcggaccgggc
ggtttgacgcgtgagcgtgcaggtatggaagtacgtgacgttcactactctcactatgga
cgtatgtgtccgattgaaacgcctgagggcccgaacatcggtttgatcaactcattgtca
tcatttgcgaaagtaaaccgctttggtttcattgagacgccataccgccgcgttgatcct
gaaacaggaaaagtaacgcctagaatcgactacctgactgctgatgaagaggataactat
gtcgtagcccaagcgaacgctaagctgagcgatgacggttctttcttggatgacagcatc
gtagcccgtttcagaggggaaaacaccgttgtagcccgcaaccgcgtggattacatggac
gtatctcctaaacaggttgtatctgctgcgacagcatgtattccgttcttggaaaacgat
gactcgaaccgcgccctcatgggagcgaacatgcagcgtcaggctgtgcctttgatgcag
ccggaagctccgatcgtcggaacgggtatggaatacgtatccggtaaagactccggtgca
gccgttatttgtaaacaccctggtatcgttgaacgggtggaagcgaaaaacgtatgggtg
cgccgctatgaagaaattgacggtcaaaaagtaaaaggcaacctggataagtacagcttg
ctgaaatttgtccgctccaaccaaggtacgtgctacaaccagcgtccgatcgtcagtgtc
ggtgatgaagtagtcaaaggagaaatccttgctgacggcccttcaatggagctgggtgag
cttgctctcggccgcaacgtaatggtcggcttcatgacatgggatggttataactatgag
gatgccatcatcatgagtgaacgtcttgtgaaagatgatgtatacacatctattcacatt
gaagaatatgaatcagaagcacgtgatacaaagcttggaccggaagagatcacccgcgat
attccaaacgtaggggaagatgcgcttcgcaaccttgatgaccgcggaattatccgtatc
ggtgcggaagtcaacgacggagaccttctcgtaggtaaagtaacgcctaaaggtgtaact
gagcttacggctgaagagcgccttctgcatgcaatctttggagaaaaagcgcgtgaagtc
cgtgatacttctctccgtgtgcctcatggcggcggcggaattatccacgacgtaaaagtc
ttcaaccgtgaagacggagacgaacttcctccgggcgtgaaccagcttgtacgcgtatat
atcgttcagaaacgtaagatttctgaaggggataaaatggccggacgtcacggaaacaaa
ggggttatctcgaagattcttcctgaagaagatatgccttaccttcctgacggcacgccg
atcgatatcatgcttaacccgctgggtgtaccatcccgtatgaatatcggtcaggtatta
gaacttcacatgggtatggctgcccgctacctcggcattcacatcgcgtcacctgtattt
gacggcgcgcgtgaagaagacgtgtgggaaacacttgaagaagcaggcatgtcaagagac
gccaaaacagttctttatgacggccgtacgggagaaccgttcgacaaccgtgtatctgtc
ggaatcatgtacatgatcaaactggcacacatggttgatgataaacttcatgcccgttct
acaggcccttactcacttgttacgcagcagcctctcggcggtaaagcccaattcggcgga
cagcgtttcggtgagatggaggtttgggcgcttgaagcttacggcgcagcttacacgctt
caagaaatcctgactgtgaagtctgatgacgtggtcggacgtgtgaaaacatatgaagcc
atcgtcaaaggcgataatgttccagagcctggtgttccggaatcattcaaagtattgatc
aaagagcttcaaagcttaggtatggatgtaaaaatcctctcaagtgatgaagaagaaata
gaaatgagagatctagaagacgaagaagatgcgaaacaagctgacggccttgcattatca
ggtgatgaagcgccggaagaaacagcatctccagacgttgaacgtgacgcagtaactaaa
gaatag
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