Bartonella quintana Toulouse: BQ05840
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Entry
BQ05840 CDS
T00181
Symbol
mfd
Name
(GenBank) Transcription repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
bqu
Bartonella quintana Toulouse
Pathway
bqu03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
bqu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
BQ05840 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bqu03400
]
BQ05840 (mfd)
Enzymes [BR:
bqu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
BQ05840 (mfd)
DNA repair and recombination proteins [BR:
bqu03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
BQ05840 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
Helicase_C
CarD_TRCF_RID
UvrB_inter
ResIII
MFD_D3
AAA_22
AAA_16
Motif
Other DBs
NCBI-ProteinID:
CAF26076
UniProt:
A0A0H3LU14
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All DBs
Position
690654..694154
Genome browser
AA seq
1166 aa
AA seq
DB search
MPILKKIVIPKNISAHMIFDGVTDGFEAFALAKLSSEIAQGKPLIYVVHDGTKIAHLQQV
LNFIEPNLPVLEFPAWDCLPYDRVSPGIAVTARRLSALAHIANLRQNPRPAIILTTANAI
IQKLPPRELIETQMIYARVGQRTSMGRLIQFLESNGFERVTVVRDVGEFAVRGGILDIFS
PVDVEPLRLDFFGNTLETIRVFDSETQRTINKKTEFLLHSMSEVVLTPEVISRFKSNYIR
TFGVSQKNNMLYEALSQGRRFAGMEHWLPFFYEKLDSFFDHCGNLPLVFEHLIEEVLIEH
YRLIEDYYNARKERENDKENSTSYHPIEPNLLYLTPKHVLEIAQQSGQRVDFTPFNVPKT
FGQTVIHANVKLGYNFVKERNAQEKNVFSSVVHHIASLRAMGKKVLLACWSEGSLNRLVQ
VLDEHGLKKIDVAKSLQTVRATPHDCISAAVVMIEHGFETEDFVVIAEQDILGDRFIRSP
RRRKHNTNFISEIAALNSGDIVVHIDHGIGQFVGLKTITATGILRDCLEIKYAGGDRLFL
PIENIELLSRYGSEGTDVTLDKLGGVAWQARKTRLKKHLLEMAGQLIHIAAERATRSAPA
FVPPIGPFDEFVACFPYEETEDQKDAIDAVLEDLASGKPMDRLICGDVGFGKTEVAIRSA
FVAALNGYQVAVVVPTTLLSRQHYKTFLSRFQGLPVKIAHASRLVKTKEFTQVKKGVSDG
TIDIVVGTHALLSGAVNFLRLGLLIIDEEQHFGVKHKERLKELKSDIHVLTLSATPIPRT
LGLALSGVRELSLITTPPIDRMAVRTFIAPFDTLVIRETLLREYYRGGQSFYVCPRISDL
AFVEEYLKTHVPELKFVVAHGQMPAGQLDNIMNAFYDGQYDVLLSTTIIESGLDIPTANT
LIVHRAEIFGLSALYQLRGRVGRSKQRAYALFTFPSGKVLTAAADRRLKVLQSLNTLGSG
FQLASHDMDIRGSGNFLGEEQSGHIKEVGFELYQKMLEEAVAELKDGKQNEDKQWSPQIS
LGTTVMIPESFVPDLSLRMGLYRRLTELDDLEQIDEFAAELIDRFGPLPLEVQHLLKVFY
IKTLCRKAHVEKLDTGPKGIIVQFRNNYFANSVALVQWIGKQGSMAKIRPNQSIIFIRDW
TTLDERLAGVVTIMIQLVEMAEQRSV
NT seq
3501 nt
NT seq
+upstream
nt +downstream
nt
atgcctatattaaaaaaaattgtcattcccaaaaatatttctgctcacatgatttttgat
ggagttactgatgggtttgaagcctttgcacttgctaaattgagttcagaaattgcacag
ggtaaaccacttatctatgttgtccacgatggaacaaaaattgctcatttacagcaagtt
ttaaattttattgagcccaatttgcctgtacttgaatttcctgcatgggattgcttaccc
tatgatcgtgtgtcacctggaattgctgttacagcacgtcgattatcagctttggcacat
atagcaaatttgcgtcaaaatccacgccctgcaattatattaacaacagcaaatgcaatt
atacaaaaattacctcctcgtgaattaattgaaactcagatgatttatgcacgtgttggc
cagcgtactagcatggggcgtttaattcaatttttagaatccaatggttttgaacgtgtt
acggttgtccgtgatgttggggaatttgctgtgagagggggaattcttgatattttttct
cccgttgatgttgaacctttacggcttgatttttttggaaataccttggaaaccatccgt
gtgtttgattcagaaacacaaagaacaatcaataaaaaaactgaatttttgttacactcg
atgagtgaagttgttcttacacctgaggttattagccgatttaaaagcaattatatccgt
acatttggtgtatcacaaaaaaataacatgctttatgaagctctttctcaagggcgacgt
tttgctggtatggaacattggttaccatttttttatgagaaacttgatagtttttttgat
cattgtggtaatttaccacttgtttttgaacatctcatagaagaagtgctcattgagcat
tatcgccttattgaggattattataatgcacgtaaagagcgtgaaaatgataaagaaaat
tctacttcttatcatccgatagagcctaaccttctctatttaacaccaaagcatgtttta
gagatcgcacaacaatccggacaacgtgttgattttacgccttttaatgttccaaaaact
tttggacaaaccgttattcatgcgaatgttaagctgggatataattttgtaaaagagcgc
aatgcgcaagagaaaaatgttttctcaagtgttgttcatcatattgcttcattgcgcgct
atgggtaagaaggtgcttttagcttgttggagtgaagggtctcttaatcgtttggtgcag
gttcttgacgagcatggattgaaaaaaatagatgttgcaaaatctttgcaaactgtcaga
gcaacacctcatgattgtatatcagcagctgttgtgatgatagaacacggttttgagact
gaagattttgtcgttatagcagaacaggatattcttggtgatcgatttataagatcacca
agacggcgtaaacataatacaaattttatttctgaaattgctgctttaaattctggtgat
attgttgtgcatatcgatcatggtattgggcaatttgttggtcttaagaccattacggca
actggaattttacgagattgtcttgaaattaagtatgctggaggcgatcggcttttttta
cctattgaaaatatcgaacttctttcacgttatggttcagagggaacagatgtcacttta
gataagttaggtggtgttgcctggcaagcccgtaaaacacgactcaaaaaacatttattg
gaaatggctggccaattgatccatatagctgcagagcgtgccacgcgttctgcgcctgct
tttgttccaccaattggaccatttgatgagttcgttgcatgctttccttatgaagaaacg
gaagatcaaaaggatgcaatcgatgctgttttagaggatttggcatcaggaaaaccgatg
gatcgtttaatatgtggtgatgttggttttggaaaaacagaagttgccattcgaagcgct
tttgttgcagcattaaatggatatcaggttgctgttgttgtgccaacaactttgctttca
cgacaacattacaaaacttttctttcacgttttcagggattacccgttaaaattgctcat
gcttcaaggcttgtgaaaactaaggaatttacacaagtcaaaaagggtgtttcagatggc
acgattgatattgtcgttggaacgcatgcattattaagtggtgcagttaattttttacga
ttaggacttcttatcattgatgaagagcagcattttggcgtaaaacacaaagagcgttta
aaagagcttaaaagtgatattcatgttctcacactttccgcgacccccataccacgaact
ttaggtttggctttatcgggagtacgtgagctttcattgataacgactccgcccattgat
agaatggcagtacgtacttttattgcaccttttgatacgcttgttatacgggagactctg
ctccgagaatattaccgtggtggacaaagtttttatgtttgccctcgtatttctgatctt
gctttcgtggaagagtatctcaaaacacatgttcccgaacttaaatttgtcgtagcacat
gggcaaatgccagctggacaacttgataacattatgaatgcattttatgatggacaatat
gatgttctgctctcaacaaccattattgaatcaggtcttgatattccaacagccaataca
ttaatcgtacatcgtgctgagatatttggtctttctgctctctaccagttacgtggtaga
gtagggcgctcaaaacaacgtgcttacgcactttttacatttccttctggtaaagtttta
acggctgctgctgatcgtcgtcttaaagttttgcaatctcttaatactttgggaagcggt
tttcaattggcaagtcatgatatggatattcgcggttcaggaaattttttaggtgaagag
caatcggggcatataaaagaagttggttttgagctgtatcaaaaaatgcttgaagaggct
gttgcggaattaaaagatggcaagcaaaatgaggataagcaatggtctccccaaatttca
cttggtacaaccgtgatgataccagaaagtttcgtgcctgatttatcattacgtatgggg
ctttatcgtcgtttgacagaacttgatgatttagaacaaattgatgaatttgctgctgaa
ttaattgatcgctttggtcctttaccacttgaagttcagcaccttcttaaagttttttac
attaaaacattgtgtcgaaaagcacatgtagaaaaattggatactggaccaaagggaatc
attgtacagtttcgtaataattattttgcaaacagtgttgctcttgttcaatggattgga
aaacaaggctcgatggcaaaaattcgaccaaatcaaagtattatttttattcgggattgg
acaacattggatgaaagacttgctggagtagtaacgattatgatacagcttgtagaaatg
gcagagcagcgttctgtttag
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