Bradyrhizobium sp. ORS 278: BRADO3771
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Entry
BRADO3771 CDS
T00516
Symbol
Mfd
Name
(GenBank) transcription repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
bra
Bradyrhizobium sp. ORS 278
Pathway
bra03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
bra00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
BRADO3771 (Mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bra03400
]
BRADO3771 (Mfd)
Enzymes [BR:
bra01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
BRADO3771 (Mfd)
DNA repair and recombination proteins [BR:
bra03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
BRADO3771 (Mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
MFD_D3
AAA_16
SecA_DEAD
RecG_dom3_C
AAA_25
UB2H
Motif
Other DBs
NCBI-ProteinID:
CAL77541
RhizoBase:
BRADO3771
UniProt:
A4YUG5
LinkDB
All DBs
Position
3938717..3942235
Genome browser
AA seq
1172 aa
AA seq
DB search
MMKSPVKSPAEHLAPGRALTLANVAEGAEGLVVSDLARAIAARPKPPAVSLAVVCRDGNR
MQQLARALDFFAPDLPVMQFPAWDCQPYDRVSPHGGILAQRVTTLARLSRLAGSDKPLIV
LTTVNAIVQRVPSRDTMAGQALSVAPGHVVPMDSVVAWLEHNGYVRASTVRESGEYAVRG
GILDLFPAGLDQPVRFDYFGDSLESIRTFDAETQRTLLDMRSLDLVPVSEFQLVTDTIRR
FRMGYVAEFGAPERDDALYEAVSEGRRYPGMEHWLPLFHDKMETLFDYLPNTPIVIEPQG
EDAARERFKQIIDYYDARREAMEHPGGGAIYKPLTVDRLYLTSTEWADRLAAVPLARVTP
FAVPEGSSVVDIGARAGRNFAPERNDAAVNVFEAVVAHVQALQSVRKKVVIALWSEGSRD
RMASMLKDHKLIHVTSVNAWRMVQATPRNETMLAVLGLETGFETDQIAVISEQDILGDRL
VRPRRASRKLDNFISEVTSLAIGDIVVHVDHGIGRFVGLQTLEVAGAPHDCLELRYAGET
KLYLPVENIELLSRYGSDQTNVELDKLGGSGWQTRKAKLKNRIREMAGELIKIAAERMLH
EAPKMPVQAGLYDEFCARFPYDETEDQLAAIQATLGDLEAGRPMDRLVCGDVGFGKTEVA
LRAAFAVALDGKQVAVVVPTTLLARQHAKTFTERFRGFPVNVAQASRLVSTKELNQVKKG
LADGSVDIVVGTHALLGKTVKFRDLGLVIVDEEQHFGVSHKERLKQLRAEVHVLTLSATP
IPRTLQLALTGVRELSIIASPPVDRLAVRTFVAPHDPVMIREALLRERYRGGQAFYVVPR
IDDLAEVKEFLDKTVPEMKVAVAHGQMAPTVIEDIISAFYDGKFDILLSTTIVESGLDIP
RANTLIVHRADMFGLAQLYQLRGRVGRSKLRAYALFTLPSTHKVSAQAEKRLGVLQSLET
LGAGFQLASHDLDIRGAGNLLGDEQSGHIKEVGFELYQSMLEEAIENLKAGITEPTVDRW
SPQITIGMPVLIPEDYVSDLSVRLSLYRRLADLETDEEIENFAAELRDRFGKLPDETRYL
FKVAAIKNYCRRANVEKVDAGPKGAVIAFRDNSFAYPDRLVAFIKRHGQAAKVRPDMKVV
FLQVWETPEERLAGTTDILKELAELAEKKKAA
NT seq
3519 nt
NT seq
+upstream
nt +downstream
nt
ttgatgaagagtccggtcaagtcgcccgccgagcatctcgccccggggcgcgcgctcacg
ctcgccaatgtcgccgagggggccgagggtctcgtcgtctccgatctggcgcgcgccatc
gccgcccggccgaagccgccggccgtcagcctcgccgtggtctgccgcgacggcaaccgg
atgcagcagctggcgcgggcgctcgacttcttcgcgccggatcttcctgtcatgcagttc
ccggcctgggactgccagccttatgaccgcgtctcgccgcatggtggcatcctggcacag
cgcgtgacgacactcgcgcggctgtcgcgcctcgccggcagcgacaagccgctgatcgtg
ctgaccaccgtcaacgccatcgtccaacgcgtgccgtcgcgcgacaccatggccggccag
gcgctgtcggtggcgccggggcacgtcgtgccgatggattccgtcgtcgcgtggctcgag
cataacggctacgtcagagcttctaccgtgcgcgagagcggcgaatatgccgtgcgcggc
ggcatcctcgacctgtttcccgccggcctcgaccagcccgtgcggttcgactatttcggc
gacagcctggaatcgatccgcaccttcgacgccgagacgcagcgcaccttgcttgacatg
cgctcgctcgatctcgtgccggtctccgaattccagctcgtcaccgacaccatccgccgt
ttccgcatgggctatgtcgccgagttcggcgcgcccgagcgcgacgacgcgctgtatgag
gccgtcagcgaaggccgccgctatcccggcatggagcactggctaccgctgttccacgac
aagatggagacgctgttcgactatctgccgaacacgcccatcgtgatcgagccgcagggc
gaggacgccgcgcgcgagcgcttcaagcagatcatcgactactacgacgcgcgccgcgag
gcgatggagcatcccggcggcggcgcgatctacaagccgctgacggtcgaccggctgtat
ctgacatcgacggaatgggcggaccggctggccgccgtgcctctcgcgcgcgtgacgcca
ttcgcagtgcccgagggctctagcgtcgtcgatatcggcgcgcgggccggccgcaacttc
gcgccggagcgcaacgacgccgcggtcaacgtgttcgaggccgtggtggcgcacgtgcag
gcgctgcaatcggtgcgcaagaaggtcgtgatcgcgctgtggagcgaaggctcgcgcgac
cgcatggcctccatgttgaaggatcacaagctgatacatgtcaccagcgtcaacgcctgg
cgcatggtgcaggcgacgccgcgcaacgagaccatgctcgcggtgctcggcctggaaacc
ggcttcgagaccgaccagatcgcggtcatttccgagcaggacatcctcggcgaccgcctg
gtccggccgcgccgcgccagccggaagctcgacaatttcatctcggaggtgacgagcctc
gccatcggcgacatcgtcgtgcacgtggaccatggcatcggccgcttcgtcggcctgcag
acgctggaggtcgccggcgcgccgcatgactgtctcgagctgcgctatgccggcgagacc
aagctgtatctgccggtcgagaacatcgagctgctgtcgcgctacggctccgaccagacc
aatgtcgagctcgataagctcggcggctcgggctggcagacgcgcaaggccaagctgaag
aaccgcatccgcgagatggccggcgagctgatcaagatcgccgccgagcgcatgctgcac
gaggcgccgaagatgccggtgcaggccggcctctacgacgagttctgcgcgcgcttcccc
tatgacgagaccgaggatcagcttgccgcgatccaggcgacgctcggcgatctcgaagcg
ggacggccgatggaccgcctcgtctgcggcgacgtcggtttcggcaagaccgaggtggcg
ctgcgggcggccttcgcggtcgcgctcgacggcaagcaggtcgccgtggtcgtgccgacc
acgctgctcgcgcgccagcacgcgaaaaccttcaccgagcgcttcaggggctttcccgtc
aacgtcgcgcaggcctcgcgcctcgtctcgaccaaggagctcaaccaggtcaagaagggc
ctcgccgacggctcggtcgacatcgtcgtcggcacgcatgctctgctcggcaagaccgtg
aaattccgcgacctcggcctcgtcatcgtcgacgaggagcagcacttcggcgtcagccac
aaggagcggctgaagcagctgcgcgcggaggtccacgtgctgaccttgtccgcgacgccg
atcccgcgcaccttgcagctggcgctgaccggcgtgcgagagctgtcgatcatcgcctcg
ccgccggtcgatcgtctcgccgtgcgcaccttcgtcgcgccgcacgatcccgtgatgatc
cgcgaggccttgttgcgcgagcgctatcgcggcggccaggcgttctacgtcgtgccgcgc
atcgacgatctcgccgaggtcaaggaattcctcgacaagaccgtgccggagatgaaggtc
gcggtcgcccacggccagatggcgcccaccgtgatcgaggacatcatctcggcgttctac
gacggcaagttcgacatcctgttgtcgaccacgatcgtcgaatccggcctcgacattccc
cgcgccaacacgctgatcgtgcatcgcgccgacatgttcggtctcgcgcagctctatcag
ctgcgcggccgcgtcggccgctccaagttgcgcgcctatgcgctattcaccctgccgtcg
acccacaaggtcagcgcgcaggccgagaagcgcctgggcgtgctgcaatcgctggagacg
ctgggcgcgggcttccagctcgccagccacgacctcgacatccgcggcgccggcaatctg
ctcggcgacgagcagtccggccacatcaaggaggtcggcttcgagctctatcagtcgatg
ctggaggaggcgatcgagaacctcaaggccggcatcaccgagccgaccgtcgaccgctgg
tcgccgcagatcaccatcggcatgcccgtgctgattccggaggactacgtctccgacctg
tcggtgcggctgtcgctgtatcgccgcctcgccgatctcgagaccgacgaggagatcgag
aactttgccgccgagctacgcgaccgcttcggcaagctgccggacgagacgcgctatctg
ttcaaggtcgcggcgatcaagaactactgccgtagagccaatgtcgagaaggtcgacgcc
ggcccgaagggcgccgtcatcgccttccgcgacaacagttttgcctatcccgaccgcctg
gttgccttcatcaagcgccatggccaggccgccaaggtgcgccccgatatgaaggtggtg
ttcctgcaggtctgggagacgccggaggagcggctggcgggcacgacggatattctgaag
gagctggcggagctcgcggagaagaagaaggcggcgtag
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