Bradyrhizobium sp. ORS 278: BRADO5823
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Entry
BRADO5823 CDS
T00516
Name
(GenBank) putative ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
bra
Bradyrhizobium sp. ORS 278
Pathway
bra03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
bra00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
BRADO5823
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bra03400
]
BRADO5823
Enzymes [BR:
bra01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
BRADO5823
DNA repair and recombination proteins [BR:
bra03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
BRADO5823
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
RNA_ligase
DUF5824
Motif
Other DBs
NCBI-ProteinID:
CAL79487
RhizoBase:
BRADO5823
UniProt:
A4Z011
LinkDB
All DBs
Position
complement(6037908..6040622)
Genome browser
AA seq
904 aa
AA seq
DB search
MALKKLSTYRKKRDFEKTAEPSGDARIAPAARPRFVIQKHDATRLHYDLRLEFDGVFKSW
AVTKGPSLDPHDKRLAVEVEDHPLDYGDFEGTIPEGEYGGGTVMLWDRGYWESDDPERGF
TKGDLKFTLEGEKLHGSWVLVRMRHDRTGGKRTNWLLIKHRDEFAREGAANDVLDADKSV
ASGRTMEQIAAGKGRAPKPFMLAKRQRMNADAIWHSNRSDGETKTSKVSTKAASSRTKAA
KAGRAKSSRVSKMAEPKTVSSLPDFVPPELCTSVAQPPSGEGWAHEIKFDGYRVQIRVED
GQAALKTRKGLDWTAKFGVIAEAAAKLPDAIIDGEIVALDKDGNPNFSALQAAISAGQTD
ELVFFAFDLMFVEEFDLRRQPLRERKARLAKLLKANIKGKTPVIRYVEHFESDGEAVLES
ARKLSLEGIVSKKLDSAYHSGRTESWTKAKTRPGHEVVVGGWKTTNGKFRSLMVGVNKDD
HLAYVGIVGTGFGQDTVKAIMPALKAAASDKSPFSGKNAPRKAREVHWLKPELVAEIEFA
GFTGDGNVRQASFKGLRQDKPAREVVAEEPVVAAKVTKPVARAAATVATGGTTVHKTPSR
TKGAATVMGVAISKPDKALWPDAGDGEPVTKLDLATYLEAVGDWMIEHLKGRPCSIVRAP
DGIGGERFFQRHGMQGMSDLLELVKVSGDRKPYLQIDRVEGLIAVAQVAAVELHPWNCAP
DAYDVPGRLVFDLDPAPNVAFEEVIAAAKEMRQRLKTLGLESFCKTTGGKGLHVVTPLLH
GARDQVTWPEAKAFAQGVCQWMANDSPDDYLLNMSKKLRKGKIFLDYLRNDRMSTAVAVL
SPRAREGATVSMPVTWAQVKNGLDPKRYTIRTVPALLAKTKAWDGYDDAAGAIRPAIRKL
TDTL
NT seq
2715 nt
NT seq
+upstream
nt +downstream
nt
gtggcgctcaagaagctttccacctatcgcaagaagcgcgatttcgaaaaaacggcagag
ccgtccggtgacgccaggatcgcgcccgccgcgcggccgcgcttcgtcatccagaagcat
gacgccacccggctccattacgatctcaggctcgaattcgacggcgtcttcaagtcctgg
gcagtgaccaaggggccgtcgctcgatccgcacgacaagcgcctcgcggttgaggtcgag
gatcatccgctcgactatggcgatttcgaaggcacgattcctgaaggcgaatatggcggc
ggcacggtgatgctgtgggaccgcggctattgggagagcgatgatcccgaacgcggcttc
acgaagggcgacctgaaatttacgcttgagggtgagaagctgcacggcagctgggtgctg
gtgcggatgcgccacgaccgcaccggcggcaagcgcaccaactggctgctgatcaagcat
cgcgacgagttcgcccgggaaggcgcggccaacgacgttctcgatgccgacaagtcggtg
gcctcgggtcgcaccatggagcagatcgcggccggcaagggcagggcaccgaagccgttc
atgctcgccaagaggcagcgcatgaatgccgacgccatatggcactccaatcgcagcgac
ggcgaaacgaagaccagcaaggtgtcgaccaaggcagcatcgtcgagaacgaaggccgcg
aaggcagggagggcgaagtcctcgcgcgtgtcgaagatggcggagccaaagaccgtctcg
tcgctgccagacttcgtgccgcccgagctgtgcacctccgtcgcacagccgcccagcggc
gagggctgggcgcacgagatcaagttcgacggctaccgcgtgcagatccgggtcgaggat
ggccaggcggcgctgaagacgcgcaagggcctcgactggaccgccaagttcggcgtgatc
gccgaggcggctgccaagctgccggatgcgatcatcgacggcgagatcgttgcgctcgac
aaggatggtaacccgaacttctccgcgctgcaggcggcgatctcggccgggcagaccgac
gagttggtgttctttgccttcgacctgatgttcgtcgaggagttcgacctgcgccgccag
ccgctccgcgagcgcaaagcacgcctggccaagctcttgaaggccaacatcaagggcaag
acgcccgtgatccgttacgtcgagcatttcgagagcgacggtgaagcggtgctggagtcg
gcgcgcaagctatccctcgaagggatcgtctcgaagaagctggactcggcctatcactcc
ggtcgcaccgagagctggaccaaggcgaagacccgtcccggccacgaggtcgtggtcggc
ggctggaagaccaccaacggcaaattccgctcgttgatggtcggcgtcaacaaggacgat
catctcgcttatgtcggcatcgtcggcaccggcttcggtcaggatacggtgaaggcgatc
atgcctgcgctgaaggcggccgcatccgacaagagtccgttcagcggcaagaatgccccg
cgcaaggcgcgcgaggtgcattggctcaagcccgagctggtcgccgagatcgagttcgca
ggcttcaccggagacggcaatgtgagacaggcctcgttcaaggggctgcgtcaggacaag
ccggcgcgcgaggtcgtcgcggaggagccggtggtcgcggccaaggtgacgaagccggtg
gcgcgggccgccgccacggtcgcgaccggcggcaccacggtccacaagacgccgtcacgc
accaagggcgcggccacggtgatgggcgttgcgatctcgaagccggacaaggcgctatgg
ccggatgcgggcgatggcgagccggtcacgaagctcgatctcgccacctatctggaagcg
gtcggcgactggatgatcgagcatctgaagggccggccgtgctcgatcgtccgtgcgccc
gacggaatcggcggcgagaggttttttcagcggcacggcatgcagggcatgtcggacctg
ctcgaactggtaaaggtgtccggagaccggaagccttatctgcagatcgatcgcgttgag
ggactgatcgcggtggcgcaagtggccgcggtcgagctgcatccgtggaattgtgcgccc
gatgcctacgatgtgccgggccgcctggtgttcgatctcgatccggcacccaacgttgca
ttcgaggaggtgatcgcggcggccaaggagatgcggcagcgtctcaagacgctcggcctg
gagagcttctgcaagaccaccggcggcaagggcctgcatgtcgtgacaccgctgctgcat
ggcgcgcgcgaccaggtgacatggccggaggcgaaagcgtttgcgcagggcgtgtgccag
tggatggccaatgacagccccgacgactatttgctcaacatgtcgaagaagctgcgcaag
ggaaagatcttcctcgactatctgcgcaacgatcggatgtcgacggcggttgccgtgctg
tcgccgcgggcgcgcgagggcgcgacggtgtcgatgccggtgacgtgggcgcaggtgaag
aacggacttgatcccaagcgctacaccatccgcaccgtaccggcgctgctggccaagacc
aaggcgtgggatggctacgatgatgcagccggagcgatcaggccggcaatcaggaagctg
accgacacgttgtga
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