Bradyrhizobium sp. BF49: BF49_3871
Help
Entry
BF49_3871 CDS
T04337
Name
(GenBank) ATPdependent DNA ligase EC 6511
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
brad
Bradyrhizobium sp. BF49
Pathway
brad03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
brad00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
BF49_3871
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
brad03400
]
BF49_3871
Enzymes [BR:
brad01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
BF49_3871
DNA repair and recombination proteins [BR:
brad03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
BF49_3871
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_C
DNA_ligase_A_M
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
CUT12791
LinkDB
All DBs
Position
I:3980508..3981455
Genome browser
AA seq
315 aa
AA seq
DB search
MARKSTLPYRLQPMLASLTDAPFDDPDWVFEDKFDGFRMVAEIRRGRVALYSRNGKIISH
SYVEVAKALEGVKADAVIDGELVAIGKDGVSHFQLLQNALRHEAKLLYCAFDLMFAAGED
LRALPLLERKKRLKALLPRHKLIAFSNHRKDSGTKFFAQAELRHLEGIMAKRADSPYASG
RRTADWLKVKTAQRQEVVIAGFTAPRRTRPFFGALVLAVRDADAWRYIGHVGTGFSHQVL
EELHRKLVRLKTAKSPFPGKVKNERVTTWVRPSLVAEVKFAEWTSKGELRQPVYLGLRSD
KNAKDVVREKKWSRK
NT seq
948 nt
NT seq
+upstream
nt +downstream
nt
atggcccgcaaatcgaccctgccttatcgcctgcagcccatgttggcctcgctcacggat
gcgccgttcgacgatcccgattgggtcttcgaggacaaattcgatggtttccgcatggtc
gcggaaatccggcgtggtcgggtcgcgctctacagccgcaacgggaagatcatcagccac
tcctatgtcgaggtcgcgaaagcacttgagggagtgaaggcggacgccgtgatcgatggc
gagctcgttgcgatcgggaaggacggcgtatcccatttccagttgcttcaaaacgctctg
cgtcacgaggccaagcttttgtactgcgcgttcgacctcatgttcgcagcgggcgaggac
ctgcgtgcgctgccgcttctcgagcgcaagaagcggctcaaggccctcttgccgcgccac
aagctcatcgcgttcagcaaccaccgcaaagacagcggcacaaagttctttgcacaagcc
gagctgagacatctcgaaggcatcatggccaagcgcgccgacagcccgtacgcgtccgga
cgccggaccgccgattggctgaaggtgaagaccgcgcagcggcaggaggtagtgatcgcc
ggcttcaccgcgccgaggcgaacccggcccttcttcggggccctcgtgctggcggtacgc
gacgccgatgcatggcggtacattggccacgtcggcaccggcttcagccaccaggttctc
gaagagcttcaccgcaagctcgtgaggctgaagacagccaagtcgcccttccctggcaag
gtgaaaaatgagcgggttacgacctgggtgcgtccttccttggtcgcggaagtgaaattc
gcggagtggaccagcaagggcgagctgcgccagccggtctatctcggcctgaggtccgac
aaaaacgccaaggacgtcgttcgcgaaaagaagtggtcgcgaaaataa
DBGET
integrated database retrieval system
