Bradyrhizobium sp. C-145: LRP30_20510
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Entry
LRP30_20510 CDS
T09672
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
braz
Bradyrhizobium sp. C-145
Pathway
braz03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
braz00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
LRP30_20510 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
braz03400
]
LRP30_20510 (mfd)
Enzymes [BR:
braz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
LRP30_20510 (mfd)
DNA repair and recombination proteins [BR:
braz03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
LRP30_20510 (mfd)
BRITE hierarchy
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
MFD_D3
UB2H
AAA_25
SecA_DEAD
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
UQR67489
LinkDB
All DBs
Position
complement(4403154..4406672)
Genome browser
AA seq
1172 aa
AA seq
DB search
MKQGMKSPAELLTPGRALTLANVAEGAEGLVVSDLARAIAARPKKPAVSLAVVCRDGPRM
QQLERALQFFAPDLPVLIFPAWDCQPYDRVSPHGGILAQRLTTLARLASLTGSDKPLIVL
TTVNAVVQRVPARELVAAQALSVAPGNVVPMDTIVAWLEHNGYNRSSTVREPGEYAVRGG
ILDLFPAGLDQPVRFDFFGDSLESIRSFDAETQRTLLDMRALDLVPISEFQLVTDTIRRF
RMGYVAEFGAPERDDALYEAVSEGRRHPGMEHWLPLFQDRMDTLFDYLQGAAVAIEPQAE
DAVRERFKQILDYYEARREAMEHPGGGAIYKPLPPDRLYLTEEEWGRRLGDIPLARLTQF
SVPADGTSVIDAGARKGRDFAPERNDTTVNVFESVVAHVMALQAQRKKVVIALWTEGSRD
RMTSMLRDHKLAHTTSVNSWRTVQATPRNETMLAVLGLESGFETDEIALISEQDILGDRL
VRPRKASRKLDNFISEVTSLTAGDIVVHVDHGIGRFIGLQTLDVAGAPHDCLELHYAAET
KLFLPVENIELLSRYGSDQTTVELDRLGGGGWQTRKAKLKNRIREIAGELIKIAAARHLH
EAPKLPVQPGLYDEFCARFPYDETEDQLGAIESTLKDLELGRPMDRLICGDVGFGKTEVA
LRAAFAVALEGKQVAVVVPTTLLARQHARTFTERFKGFPVNVAQASRLVATKELNLVKKG
IADGSVDIVVGTHALLGKAIKFRELGLVIVDEEQHFGVTHKERLKALRSEVHVLTLSATP
IPRTLQLALTGVRELSIIASPPVDRLAVRTFVAPHDPLMIREALLRERYRGGQAFYVVPR
IDDLAEVKDFLDKNVPEMKVAVAHGQMPPAVIEDIMTAFYDGKFDILLSTTIVESGLDIP
NANTLIVHRADMFGLAQLYQLRGRVGRSKLRAYALFTLPAQQKITAQAERRLTVLQSLET
LGAGFQLASHDLDIRGAGNLLGEEQSGHIKEVGFELYQSMLEEAIVNLKAGVSEPAADRW
SPSITIGMPVLIPEDYVGDLSVRLSLYRRLADLDTEEEIENFGAEMRDRFGVLPDEVRYL
FKVAAIKAFCRRANVEKIDAGPKGAVIVFRDNSFAYPERLVTFIRSHGQAAKVRPDMKVV
FLQDWETPEERLAGTTEIMRQLAHLAESKKAA
NT seq
3519 nt
NT seq
+upstream
nt +downstream
nt
atgaagcagggtatgaaatcaccggccgaactgctgacgcccggccgcgccttgacgctc
gccaatgtcgccgagggcgccgaaggcctcgtcgtctccgatctcgcccgggccatcgcg
gcgcggccgaagaagccggcggtcagtcttgcggtggtgtgccgcgacggtccgcggatg
cagcagctcgaacgcgcgctgcaattcttcgcgcccgatctgccggtgttgatcttcccg
gcctgggactgccagccctatgaccgcgtctcgccgcatggcggcattttggcgcaacgc
ctgacgacgttggcacggcttgcgtccctgacgggcagcgacaagccgctgatcgtgctg
accacggtgaatgccgtggttcagcgcgtgcctgcgcgcgagctcgtcgcggcgcaggcg
ctgtcggttgccccgggcaacgtggtgccgatggacaccatcgtcgcctggctggagcat
aacggctacaaccgctcctcgaccgtgcgtgagcccggcgaatacgccgtgcgcggcggc
atcctggacctgtttccggccggtctcgaccagcccgtgcgcttcgacttcttcggcgac
agcctggagtcgatccgctccttcgatgccgagacccagcgcacgctgctcgacatgcgt
gcgctcgacctcgttccgatctcggaatttcagctcgtcaccgacaccatccgccgtttc
cgcatgggctatgtcgccgagttcggcgcgcccgaacgcgacgacgcgctgtacgaggct
gtcagcgaaggccgccgccatcccggcatggagcactggctgccgctgttccaggaccgg
atggacacgctgttcgactatctgcaaggggcagcagtcgcgatcgagccgcaggccgag
gacgccgtgcgcgagcgcttcaagcagatcctcgactattacgaggcccggcgcgaggcg
atggagcatcccggcggcggtgccatctacaagccgttgccgcctgacaggctttatttg
accgaggaggaatggggcaggcgcctcggtgatatcccgctggcgcggttgacgcagttt
tccgtgccggccgatggcacgagtgtcatcgatgccggtgcgcgcaagggccgtgacttc
gcgccggagcgcaacgacaccaccgtcaacgtgttcgaatccgtggtcgcgcatgtgatg
gcactgcaggcccagcgcaagaaggtcgtgatcgcgctctggaccgaaggctcgcgcgac
cgcatgacttcgatgctgcgcgaccacaagctggcccacaccaccagcgtcaacagctgg
cggacggtgcaggcgacgccgcgcaacgagaccatgctcgccgtgctcggcctcgaaagc
ggcttcgagaccgacgagatcgcactgatcagcgagcaggacatcctcggcgaccgcctg
gtgcggccgcgcaaggcgagccgcaagctcgacaatttcatctcggaggtgacgagcctc
actgccggcgatatcgtcgtccacgtcgaccacggcatcggccgcttcatcggcctgcag
accctcgatgtcgccggtgcgccgcatgactgcctcgaactgcattatgcggccgagacg
aagctgttcctcccggtcgagaacatcgagctgttatcccgctacggctccgaccagacc
acggtcgaactcgaccgcctcggtggaggcggctggcagacccggaaggcaaaactcaag
aaccgcattcgcgagatcgcgggcgaattgatcaagatcgctgccgcgcgccatctgcac
gaggcgccaaagctgccggtgcaaccgggcctctacgacgagttctgtgcgcgcttcccc
tatgacgagaccgaggaccaactgggtgcgatcgaatccaccctgaaggacctcgagctc
ggccgtccgatggaccggttgatctgcggcgacgtcggcttcggcaagaccgaggtggcg
ttgcgcgcggcctttgccgtcgcgctcgaaggcaagcaggtcgccgtcgtggtgccgaca
acgctactcgcgcgccagcacgcgaggaccttcaccgagcgtttcaagggctttccggtc
aacgtggcgcaggcctcgcgcctggtcgcgaccaaggagctcaacctggtcaagaagggc
atcgccgacggttcggtcgacatcgtcgtcggcacccacgcgctgctcggcaaggcgatc
aagttccgcgagctcggcctcgtcatcgtcgatgaggagcagcattttggcgtcacgcac
aaggagcggctgaaggcgttgcgctccgaggtgcacgtgctgacgctgtcggcaaccccg
atcccgcgcacgctccagcttgcgctcaccggcgtgcgcgaactctcgatcattgcctcg
cccccggtcgaccgccttgcggtccgcaccttcgttgccccgcacgatccgctgatgatc
cgcgaggcgctgttgcgcgagcgctatcgcggcggccaggcgttctacgtggtgccacgc
atcgacgacctcgccgaggtcaaggatttcctcgacaagaacgtgccggagatgaaggtc
gcggtcgcgcacggtcagatgccgcccgccgtgatcgaggacatcatgacggcgttctat
gacggcaagttcgacatcctgctgtcgaccacgatcgtggaatccggcctcgacattccc
aacgccaacacgctgatcgtgcatcgcgccgacatgtttggcctcgcccagctctatcag
ctccgcggccgcgtcggccgctccaagctgcgggcgtacgcgctgttcacgctgccggcg
cagcagaagatcacggcgcaggccgagcgccggctcaccgtgctgcagtcgctggagacg
ctcggcgcgggcttccagcttgcctctcacgacctcgacatccgcggcgccggcaatctg
ctcggcgaggagcagtccggtcacatcaaggaggtcggcttcgagctctatcaatcgatg
ctggaggaggcgatcgtcaatctcaaggccggcgtctcagagcctgccgccgaccgctgg
tcgccatcgatcacgatcggcatgcccgtgctcattcccgaggactatgtcggcgacctc
tcggtgcggctatcgctgtaccggcgcctcgccgatctcgacaccgaggaggagatcgag
aattttggtgccgagatgcgcgaccgcttcggcgtgctgccggacgaggtgcgctatctg
ttcaaggtcgccgcgatcaaggcgttctgccgcagggccaatgtcgagaagatcgacgcg
ggcccgaagggcgccgtcatcgtcttccgcgacaattctttcgcctatcccgagcgcctg
gtgacgttcatccgcagccacggccaggccgccaaggtgcgccccgacatgaaggtggtg
ttcctccaggactgggagaccccggaagagcgtctcgccggcaccacggagatcatgcgg
caactggcgcacctcgccgagagcaagaaggcggcgtga
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integrated database retrieval system
