Bradyrhizobium sp. C-145: LRP30_35985
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Entry
LRP30_35985 CDS
T09672
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
braz
Bradyrhizobium sp. C-145
Pathway
braz03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
braz00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
LRP30_35985 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
braz03400
]
LRP30_35985 (ligD)
Enzymes [BR:
braz01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
LRP30_35985 (ligD)
DNA repair and recombination proteins [BR:
braz03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
LRP30_35985 (ligD)
BRITE hierarchy
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
DNA_primase_S
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
UQR68141
LinkDB
All DBs
Position
complement(7669017..7671704)
Genome browser
AA seq
895 aa
AA seq
DB search
MLQKLSTYRQKRDFEKTPEPSGKTPVAPSKQRRFVIQKHDASRLHYDFRLELDGVFKSWA
VTKGPSLDPHDKRLAVEVEDHPLDYGDFEGTIPEGQYGGGTVMLWDRGTWESEDPEAGFK
KGDLKFILHGDKLHGSWVLVRMRNRGGEKRTNWLLIKHRDEHVREGADNDILDQDKSVAS
GRAMEQIAEGKGRAPKPFMLAKGLRGPKGKANAVWQSNRAEEAKGRTVKPAPRTALKAGT
TARKKATTAANTKKVSEIPDFVAPQLCTLVDRPPADRGWCHEIKFDGYRVQLRVEDGEAT
LKTRKGLDWTGKFASIAKDAGVLPDVMIDGEIVALDHNGAPNFSSLQAALSDGKTDELIF
FAFDLLFAENQDYRRLPLGERKARLKELLESRKRKASQIRYVEHFESGGDAVLQSACKLE
LEGVVSKKLDAPYRSGRTESWVKSKCRAGHEVVIGGYKTTNGKFRSLMAGVQRGDHLAFV
GMVGTGFGADKVKRIMPSLKAMATRESPFGGKNAPKKTREMHWLKPELVAEIEFAGFTAD
GNVRQAAFKGLRQDKPAEEVEAETPVDTELAKPSAKGVKRAKAKPGARSAPSGSNAEIMG
VVISKPDKELWPDGGHGDPVTKLDLARYLEAVGEWMIVHLKGRPCSLIRAPDGIKGECFF
QRHAMQGTSNLLELARVSGDRKPYLQIDRIEGLAAVAQVGGVELHPWNCAPYAYDTPGRL
VFDLDPAPDLDFADVVEAAKEMRQRLADIGMDSFCKTTGGKGIHVVVPLLHGARDKVSWK
EAKAFAQGVCQWMANDDPERYLLNMSKKLRKGKIFLDYLRNDRMSTAIAPLSPRARAGAT
VSMPLTWAQVKSDLDPKRYTMRTVPGLLARSKAWEGYDDAAASIKAAMKKLASKK
NT seq
2688 nt
NT seq
+upstream
nt +downstream
nt
gtgctgcaaaaactctccacttaccgacagaagcgtgacttcgagaagacgcccgagcca
tcaggcaagacccctgtcgcgccctcgaagcagcggcgcttcgtgatccagaagcatgat
gccagtcggctgcattacgacttccggctcgagttggacggcgtcttcaagtcctgggcg
gtgacgaaggggccctcgctcgatccgcatgacaagcggctggcagtcgaggtcgaggac
catccgctcgactatggtgatttcgaaggtacgattccagaagggcagtacggcggcggc
accgtgatgctgtgggatcgaggcacttgggaatcggaagatccggaagccggcttcaag
aagggcgatctcaaattcatcctgcatggcgacaagctgcacggaagctgggtgctggtg
cgcatgcgcaaccgcggcggcgaaaagcggaccaactggctgctgatcaagcaccgcgac
gaacatgtccgcgaaggcgccgacaacgacatcctcgaccaggacaagtccgtcgcctcc
ggtcgcgcgatggagcagatcgccgaagggaagggccgcgcgcccaaacctttcatgctg
gccaagggtcttaggggtcccaagggcaaggccaatgcggtctggcagtccaaccgcgcc
gaggaggcgaaagggcgaacggtgaagccggcgccgcgcacggcgttgaaggccggaacg
acggcaaggaagaaggcgacgacagcagcaaacacgaagaaggtttcagagataccggat
ttcgtggcgccgcagctctgtacgctggtcgatcggccgccggccgaccggggctggtgt
cacgagatcaagttcgacggctatcgcgtccagctccgggtcgaggacggcgaagcaacg
ctcaagacgcgcaaaggcctcgactggaccggcaagttcgcctccattgccaaggatgcg
ggcgtgctgccggacgtgatgatcgacggcgagatcgtcgcgctcgatcacaacggcgcg
ccgaacttctcctcgcttcaggctgcgttgtccgatggcaagaccgacgagctgatcttc
tttgccttcgacctgctgttcgccgagaaccaggattaccgccgactgccgctcggcgaa
cgcaaggcccggctgaaggagctcctggaatcgcgcaagcggaaggcgagccagatccga
tatgtcgagcatttcgagagcgggggcgatgccgtgctgcaatcggcgtgcaagctcgag
ctcgagggggtggtatcgaagaagctggatgccccgtatcgttccggccgcaccgagagc
tgggtcaagtcgaaatgtcgcgccggccacgaggtggtgatcggcggctacaagaccacg
aatggcaagttccgctcactgatggccggcgtgcagcgcggcgatcatctcgccttcgtc
ggcatggtcggcaccggctttggcgcggacaaggtcaaacgcatcatgccgtcgttgaag
gccatggcgaccagggaaagtcccttcggcggcaagaatgcgccgaagaagacccgcgag
atgcactggctgaagccggagctcgtcgccgagatcgagttcgccggcttcaccgccgac
ggcaatgtccgccaagcagctttcaaaggcctgcggcaggacaagcctgccgaggaggtc
gaggccgagacgccagtcgacaccgagctcgccaaaccctcagccaaaggagtgaagcgc
gcaaaagcgaagccaggcgcgcgatcggcccccagcggcagcaacgccgagatcatgggt
gtcgtcatctccaagccggacaaggagctctggcccgacggcggacatggcgatcccgtc
accaagctggaccttgcccgctatctcgaagccgtcggcgaatggatgatcgtgcacctg
aagggccggccttgctcgctgatccgcgctcctgacggcatcaagggcgaatgcttcttt
cagcgccatgccatgcagggcacgtcgaaccttctggagctcgcaagggtctccggcgac
cgcaagccgtacctgcagatcgatcggatcgaagggctcgctgcagtggcgcaggtcggc
ggcgtcgagctgcatccatggaattgcgcgccttatgcctatgacacgccgggacggctg
gtgttcgatctcgaccctgcacccgacctcgacttcgccgacgtcgtcgaggcggccaag
gagatgcggcagcggctcgccgatatcggcatggacagcttctgcaagaccactggcggc
aagggcatccatgtggtggtgccgctgctccacggcgcgcgcgacaaggtgagctggaag
gaggccaaggcgtttgcgcaaggcgtctgccagtggatggccaatgacgatcccgaacgc
tatctgctcaacatgtccaagaaattgcgcaagggaaagatcttcctggactatttgcgc
aacgaccgtatgtcgacggcgattgccccgctgtcgccgcgcgcgcgcgccggtgccacg
gtgtcgatgccgctgacttgggcgcaggtgaagagcgatctcgatccgaagcgctatacg
atgcgcaccgtgccgggcctgctggcgcgatcgaaagcgtgggaaggttatgatgatgcc
gccgcctcaatcaaggcggccatgaagaagctggcgtcgaaaaagtag
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