Bradyrhizobium sp. CCGE-LA001: BCCGELA001_19670
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Entry
BCCGELA001_19670 CDS
T04273
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
brc
Bradyrhizobium sp. CCGE-LA001
Pathway
brc03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
brc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
BCCGELA001_19670
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
brc03400
]
BCCGELA001_19670
Enzymes [BR:
brc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
BCCGELA001_19670
DNA repair and recombination proteins [BR:
brc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
BCCGELA001_19670
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
MFD_D3
UB2H
SecA_DEAD
AAA_25
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
AMA58268
UniProt:
A0A109Q471
LinkDB
All DBs
Position
complement(4269464..4272982)
Genome browser
AA seq
1172 aa
AA seq
DB search
MKQGMKSPAELLTPGRALTLANVAEGAEGLVVSDLARAIAARPKKPAVSLAVVCRDGSRM
QSLERALRFFAPDLPVLTFPAWDCQPYDRVSPHGGILAQRLTTLARLASLTGSDKPLIVL
TTVNAVVQRVPARELVAAQALSVAPGNVVPMDTVVAWLEHNGYNRSSTVREPGEYAVRGG
ILDLFPAGLEQPVRFDFFGDSLESIRSFDAETQRTLLDMRSLDLVPVSEFQLVTDTIRRF
RMGYVAEFGAPERDDALYEAVSEGRRHPGMEHWLPLFQDRMDTLFDYLQGAVVAIEPQAE
DAVRERFKQILDYYQARREAMEHPGGGAIYKPLPPDRLYLTEEEWGRRLGDIPLARLTPF
SVPTDGTSVVDAGARKGRDFAPERNDTTVNVFESVVAHVMGLQAQRKKVVIALWTEGSRD
RMTSMLRDHKLAHTTSVNSWRTVQATPRNETMLAVLGLESGFETDEIALISEQDILGDRL
VRPRKASRKLDNFISEVTSLTAGDIVVHVDHGIGRFIGLQTLDVAGAPHDCLELHYAAET
KLFLPVENIELLSRYGSDQTTVELDRLGGSGWQTRKAKLKNRIREIAGELIKIAAARHLH
EAPKLPVQQGLYDEFCARFPYDETEDQLGAIESTLKDLELGRPMDRLICGDVGFGKTEVA
LRAAFAVALEGKQVAVVVPTTLLARQHAKTFTERFKGFPVNVAQASRLIATKELNQVKKG
IADGSVDIVVGTHALLGKAIKFRDLGLVIVDEEQHFGVTHKERLKALRSEVHVLTLSATP
IPRTLQLALTGVRELSIIASPPVDRLAVRTFVAPHDPLMIREALLRERYRGGQAFYVVPR
IDDLAEVKDFLDKNVPEMKVAVAHGQMPPAVIEDIMTAFYDGKFDILLSTTIVESGLDIP
NANTLIVHRADMFGLAQLYQLRGRVGRSKLRAYALFTLPAQQKITAQAERRLMVLQSLET
LGAGFQLASHDLDIRGAGNLLGEEQSGHIKEVGFELYQSMLEEAIVNLKAGVSEPAADRW
SPQITIGMPVLIPEDYVSDLSVRLSLYRRLADLDTEEEIENFGAEMRDRFGVLPDEVRYL
FKVAAIKAFCRRANVEKIDAGPKGAVIVFRDNSFAYPDRLVTFIRSHGQAAKVRPDMKVV
FLQDWETPEERLAGTTEIMRQLAQLAESKKAA
NT seq
3519 nt
NT seq
+upstream
nt +downstream
nt
atgaagcagggcatgaaatctccggccgagctgctgacgcccggccgtgcgctgacgctt
gccaatgtcgccgagggcgcagagggcctcgtcgtctccgatctcgcccgcgccatcgcg
gcgcggccgaagaagcccgcggtcagtcttgccgtggtctgccgcgatggttcgcggatg
caatcgctcgaacgcgccttgcgcttcttcgcgcccgatctgccggtgctgaccttcccg
gcgtgggattgccagccctatgaccgcgtctcgccgcatggcggcatcctggcccagcgc
ctgaccacgctggcgcggctggcctcgctcaccggcagcgacaagccgctgatcgtgctg
accacggtgaatgccgtggtgcaacgcgtgcccgcgcgcgagctcgtcgcggcgcaggcg
ctgtcggtcgcgccgggcaatgtggtgccgatggacaccgttgtcgcctggctcgagcac
aacggctacaaccgctcctcgactgtgcgcgagcccggcgaatacgcggtgcgcggcggc
attttggatctgtttccggccggcctcgagcagcccgtgcggttcgacttcttcggcgac
agcctggaatcgatccgctcgttcgacgcggagacgcagcgcacgctgctcgacatgcgc
tcgctcgatctcgtgccggtctccgaattccaattggtgaccgacaccatccgccgtttc
cgcatgggctatgtcgccgagttcggcgcgcccgagcgcgacgatgcgctgtacgaggct
gtcagcgaaggccgccgccatcccggcatggagcactggttgccgctgttccaggaccga
atggacacgctgttcgactatctgcaaggcgcagtggtcgcgatcgagccgcaggccgag
gacgccgtgcgcgagcgcttcaagcagatcctcgactattaccaggcgcgccgcgaggcg
atggagcatcccggtggcggcgcgatctacaagccgctgccgcccgatcggctttatctg
accgaggaggagtggggcaggcgcctcggcgatatcccgctggcgcggctgacgccgttc
tcggtgccgaccgatggcaccagcgtcgtcgatgccggtgcgcgcaagggccgcgacttt
gcgccggagcgcaacgacaccacggtcaacgtgttcgaatccgtcgttgcacatgtgatg
ggcctgcaggcccagcgcaagaaagtcgtgatcgcgctgtggaccgaaggctcgcgcgac
cgcatgacttcgatgctgcgcgaccacaagctggcccacaccaccagcgtcaacagctgg
cggacggtgcaggcgacgccccgcaacgagaccatgctcgccgtgctcggcctcgaaagc
ggcttcgagaccgacgagatcgcgctcatcagcgagcaggacattctcggcgaccgcctc
gtgcggccgcgcaaggccagccgcaagctcgacaatttcatctcggaggtgacgagcctt
acggccggcgacatcgtcgtccacgtcgatcacggtatcggccgcttcatcggcctgcaa
acgctcgacgtcgccggcgcaccgcatgactgcctcgagctgcattacgccgccgagacg
aagctgttcctgcccgtcgagaacatcgagctgctgtcccgctacggttccgaccagacc
acggtggagctcgatcgtctcggcggcagcggctggcagacccgcaaggcgaagctgaag
aaccgcatccgcgagatcgcgggcgagctgatcaagatcgctgccgcgcgccatttgcac
gaggcacccaagctgccggtgcagcaaggcctctatgacgagttctgcgcacgtttcccc
tatgacgagaccgaggatcagttaggggccatcgaatccaccctgaaagacctcgagctc
ggccgtccgatggaccgcctgatctgcggcgacgtcggcttcggcaagaccgaggttgct
ctccgcgcggcttttgccgttgcgctcgaaggcaagcaggttgcggtcgtggtgccgacc
acgctgctcgcgcgccagcacgcgaaaaccttcaccgagcgcttcaagggatttccggtg
aatgtggcccaggcctcgcggctgatcgcgaccaaggagctgaaccaggtcaagaagggc
atcgccgacggctcggtcgatatcgtcgtcggcacccacgcgctgctcggcaaggccatc
aaattccgtgatctcggcctcgtcatcgtcgacgaggagcaacatttcggcgtcacccac
aaggagcggttgaaggcgctacgctccgaggtgcacgtgctgacgctgtcggcgacgccg
atcccgcgcacgctgcaattggcgctgaccggcgtgcgcgagctctcgatcatcgcctcg
ccgccggtcgaccgcctcgcggtgcgcaccttcgtcgccccgcatgatcccctaatgatc
cgcgaggcgctcttgcgcgagcgctatcgcggtggccaggcgttctacgtggtgccgcgc
atcgacgacctcgccgaggtcaaggacttcctcgacaagaacgtgccggagatgaaggtc
gcggtcgcgcacgggcagatgccgcctgcggtgatcgaggacatcatgacggcgttctac
gacggcaagttcgacatcctgctgtcgaccacaattgtcgagtccggcctcgacatcccc
aacgccaacacgctgatcgtgcaccgtgccgacatgttcggcctcgcgcagctctatcag
ctccgcggccgcgtcggccgctccaagctgcgcgcctatgcgctgttcacgctgccggcg
cagcagaagatcacggcgcaggccgagcgccggctcatggtgctgcaatcgctggagacg
ctgggcgccggcttccagctcgcctcgcacgacctcgacatccgcggcgccggcaatctg
ctcggcgaggagcagtccggccacatcaaggaagtcggcttcgagctctatcaatcgatg
ctggaggaggcgatcgtcaacctcaaggctggcgtgtccgagcccgccgccgaccgctgg
tcgccgcagatcactatcggcatgccggtgctcatccccgaggattacgtcagcgacctc
tcggtgcggctgtcgctgtaccggcgcctcgccgatctcgacaccgaggaggagatcgag
aactttggcgccgagatgcgcgaccggttcggcgtgctgcccgacgaggtgcgctatctc
ttcaaggtcgccgcgatcaaggcgttctgccgccgggccaatgtcgagaagatcgacgcc
ggcccgaagggcgccgtcatcgtcttccgcgacaattccttcgcctatcccgatcgcctc
gtgactttcatccgcagccacggccaggctgccaaggtgcggcccgacatgaaggtggtg
ttcctgcaggactgggaaacgccggaagagcggctcgcgggcacgaccgagatcatgcgt
cagctggcgcagctcgccgagagcaagaaggcggcgtag
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