Brevundimonas sp. DS20: JL11_05515
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Entry
JL11_05515 CDS
T04101
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
brd
Brevundimonas sp. DS20
Pathway
brd03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
brd00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
JL11_05515
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
brd03400
]
JL11_05515
Enzymes [BR:
brd01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
JL11_05515
DNA repair and recombination proteins [BR:
brd03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
JL11_05515
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
DNA_primase_S
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
ALJ07858
UniProt:
A0A0P0CNQ1
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All DBs
Position
1142482..1145037
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AA seq
851 aa
AA seq
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MANGLEAYRAKRDFTRTPEPAGKTKAGRKGRLTYLIQRHAATRLHYDFRIEHDGVLKSWA
VTKAPSRDPAVKRLAVEVEDHPLAYGTFEGTIPSGNYGAGTVQLWDRGEWEPQEPDIEAA
LKRGSLKMILHGERLSGGWALVRLKSDRGKPSKRNNWLLIKEKDEAAVPGEGDANMEIDA
SVASGRSLAEIAEGKTQWTASRPVARKGPKPPKARPREADLAQPPAFQPIQLCKVADHPP
GGAGWVHEIKFDGYRIQIAVGGGQARLYTRRGHDWTDRFPELAADAAQWPDGVVDGELCA
LTEDHTPDFSALQAAIADGKTQDLVYFAFDLLKEGRDDLTALPLSHRKARLQALIDRIPA
KARGRVRYVDHFASTGQAVLDSACRMDLEGVISKTLNAPYQPGRSSTWVKSKCRGRDEVV
IGGWSSEGGTRFRSLLVGVAEEEGLRYLGRVGTGYSAPLLKTLLPALKAAAAETSPFVGK
GAPRGGKDIHWLRPVLVAELEHGGLTEGGSLRHAAFKGLREDKRAQEVVDDPQPPSPKQA
EKAAPTPRRTGKDKVVVAGVTLSSPDKVLWPAAGGRPAITKTGLARYYEQAAERILAHVA
DRPVSIIRAPDGIEGETFFQRHAMPGSNPRLKLIDVHERKPYVAVVDVGGLVAVAQSGGL
ELHPWGCRPGDPETPEQVTFDLDPDEGLDFEAVIAAAKTVRKTLEAKGLNPFVKTTGGKG
LHVVVPIRSDGRSRIEWDRCKAFAKAVAEEVRRADPDRFTTTLAKKARGGKIFIDYLRNG
RMATAVAPWSVRARPGAGIAFPLSWGQVKAGLDPRAFTLHDAPALLKKSDPWKDFRAGEV
SLRPVLKAMGL
NT seq
2556 nt
NT seq
+upstream
nt +downstream
nt
atggcgaacggattggaagcctatcgggccaagcgcgacttcacccgcacccccgaaccg
gccggaaagaccaaggccggacgcaagggccggctgacctatctgatccagcgccatgcg
gcgacccggctgcattacgacttccgcatcgaacatgacggggtcctgaagtcctgggcc
gtcaccaaggcgccgtcgcgcgatccggcggtcaaacgactggcggtggaggtggaggac
caccccctggcctatgggacgttcgaggggaccattccttccggcaactacggcgccggg
accgtccaactgtgggaccgcggcgaatgggagccgcaggagcccgacatagaggcggcg
ctgaagcgcggctcgctgaagatgatcctgcacggcgagcggctgagcggcggctgggcc
ctggtgcggctgaagtctgatcgcggcaagccgtccaaacgcaacaactggctgctgatc
aaggagaaggacgaggcggccgtgcccggcgagggcgacgccaatatggagatcgacgcc
tccgtcgccagcggccgcagcttggccgagatcgcggagggcaagacccaatggaccgcc
tctcgccccgtggcgcgcaagggccccaagccgccgaaggccaggccgcgcgaagccgac
ctggcccagccgcccgccttccagccgatccagctgtgcaaggtggcggaccatccgccc
gggggcgccggctgggtgcatgagatcaagttcgacggctatcgcatccagatcgccgtc
ggcggcgggcaggcgcgcctctacacccgtcgaggccatgactggaccgaccgctttccc
gaactggcggccgatgcggcccagtggcccgacggggtggtggacggcgaactgtgcgcc
ctgaccgaggaccacacgccggacttttccgcccttcaggccgccatcgccgacggaaag
acccaggacctggtctatttcgccttcgacctgctgaaggaaggacgggacgatctgacg
gccctgcctctgtcgcaccgcaaggcgcggctccaggccctgatcgaccggatcccggcc
aaggcgcgggggagggtgcgctatgtcgatcacttcgcctccaccggccaggcggtgctg
gacagcgcctgccggatggatctggaaggggtgatctccaagacgctgaacgccccctat
cagccgggccggtcctcgacctgggtcaagtccaaatgccgcggcagggacgaggtcgtc
atcggcggctggtcgtcggagggcgggacgcgctttcgctccctcctggtcggcgtggcg
gaggaggaggggctgcgttacctcggccgggtcgggaccggctattccgccccgctgctg
aagaccctgctgcccgcgctgaaggcggcggcggccgagacctcgcccttcgtcggaaag
ggggcgccgcgcggcggcaaggacatccactggctgcggccggtcctggtggccgagctg
gaacacggcggtctgaccgaaggcggctccctgcgccatgcggccttcaaggggctgcgc
gaggacaagcgggctcaggaggtggtcgatgatccgcaaccgccgtcgccgaaacaggcg
gagaaggccgcgccgacgccgcgccgaacgggcaaggacaaggtggtcgtcgccggcgtc
accctgtccagcccggacaaggtgctgtggcccgccgccggggggcggccggccatcacc
aagacgggcctggcccgctactatgaacaggcggccgaacggatcctggcccatgtcgcc
gaccggccggtgtcgatcatccgcgcgcccgacgggatcgagggcgagaccttcttccag
cgccacgccatgccgggctcgaacccgcggctgaagctgatcgacgtgcatgagcgcaaa
ccctatgtcgccgtggtcgatgtcggggggctggtcgccgtcgcccagtcgggcgggctt
gagctgcacccgtggggctgtcggcccggcgatccggagacgcccgaacaggtcaccttc
gacctggatcccgacgaaggtctggacttcgaagcggtcatcgcggcggccaagacggtg
cgaaaaacgctcgaggccaaggggctgaaccccttcgtcaagacgaccggcggcaagggg
ctgcatgtcgtggttccgatccgctcggacggccgcagccggatcgaatgggaccgatgc
aaggccttcgccaaggccgtggccgaagaggtgcgacgcgccgatcccgaccggttcacc
accaccctggccaagaaggcgcgcggcggaaagatcttcatcgactatctgaggaacggc
cggatggcgacggcggtggcgccctggtctgtgcgggcgcggccgggcgcaggcatcgcc
tttcccctgtcctggggccaggtcaaggcgggcctggatccccgggccttcacccttcac
gacgccccggccctgctgaagaagtccgatccgtggaaggacttcagggccggcgaggtc
agcctgcggcccgtgctgaaggcgatggggctttag
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