KEGG   Brevundimonas sp. DS20: JL11_05515
Entry
JL11_05515        CDS       T04101                                 
Name
(GenBank) ATP-dependent DNA ligase
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
brd  Brevundimonas sp. DS20
Pathway
brd03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:brd00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    JL11_05515
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:brd03400]
    JL11_05515
Enzymes [BR:brd01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     JL11_05515
DNA repair and recombination proteins [BR:brd03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     JL11_05515
SSDB
Motif
Pfam: LigD_Prim-Pol LigD_N DNA_ligase_A_M DNA_ligase_A_C DNA_primase_S RNA_ligase
Other DBs
NCBI-ProteinID: ALJ07858
UniProt: A0A0P0CNQ1
LinkDB
Position
1142482..1145037
AA seq 851 aa
MANGLEAYRAKRDFTRTPEPAGKTKAGRKGRLTYLIQRHAATRLHYDFRIEHDGVLKSWA
VTKAPSRDPAVKRLAVEVEDHPLAYGTFEGTIPSGNYGAGTVQLWDRGEWEPQEPDIEAA
LKRGSLKMILHGERLSGGWALVRLKSDRGKPSKRNNWLLIKEKDEAAVPGEGDANMEIDA
SVASGRSLAEIAEGKTQWTASRPVARKGPKPPKARPREADLAQPPAFQPIQLCKVADHPP
GGAGWVHEIKFDGYRIQIAVGGGQARLYTRRGHDWTDRFPELAADAAQWPDGVVDGELCA
LTEDHTPDFSALQAAIADGKTQDLVYFAFDLLKEGRDDLTALPLSHRKARLQALIDRIPA
KARGRVRYVDHFASTGQAVLDSACRMDLEGVISKTLNAPYQPGRSSTWVKSKCRGRDEVV
IGGWSSEGGTRFRSLLVGVAEEEGLRYLGRVGTGYSAPLLKTLLPALKAAAAETSPFVGK
GAPRGGKDIHWLRPVLVAELEHGGLTEGGSLRHAAFKGLREDKRAQEVVDDPQPPSPKQA
EKAAPTPRRTGKDKVVVAGVTLSSPDKVLWPAAGGRPAITKTGLARYYEQAAERILAHVA
DRPVSIIRAPDGIEGETFFQRHAMPGSNPRLKLIDVHERKPYVAVVDVGGLVAVAQSGGL
ELHPWGCRPGDPETPEQVTFDLDPDEGLDFEAVIAAAKTVRKTLEAKGLNPFVKTTGGKG
LHVVVPIRSDGRSRIEWDRCKAFAKAVAEEVRRADPDRFTTTLAKKARGGKIFIDYLRNG
RMATAVAPWSVRARPGAGIAFPLSWGQVKAGLDPRAFTLHDAPALLKKSDPWKDFRAGEV
SLRPVLKAMGL
NT seq 2556 nt   +upstreamnt  +downstreamnt
atggcgaacggattggaagcctatcgggccaagcgcgacttcacccgcacccccgaaccg
gccggaaagaccaaggccggacgcaagggccggctgacctatctgatccagcgccatgcg
gcgacccggctgcattacgacttccgcatcgaacatgacggggtcctgaagtcctgggcc
gtcaccaaggcgccgtcgcgcgatccggcggtcaaacgactggcggtggaggtggaggac
caccccctggcctatgggacgttcgaggggaccattccttccggcaactacggcgccggg
accgtccaactgtgggaccgcggcgaatgggagccgcaggagcccgacatagaggcggcg
ctgaagcgcggctcgctgaagatgatcctgcacggcgagcggctgagcggcggctgggcc
ctggtgcggctgaagtctgatcgcggcaagccgtccaaacgcaacaactggctgctgatc
aaggagaaggacgaggcggccgtgcccggcgagggcgacgccaatatggagatcgacgcc
tccgtcgccagcggccgcagcttggccgagatcgcggagggcaagacccaatggaccgcc
tctcgccccgtggcgcgcaagggccccaagccgccgaaggccaggccgcgcgaagccgac
ctggcccagccgcccgccttccagccgatccagctgtgcaaggtggcggaccatccgccc
gggggcgccggctgggtgcatgagatcaagttcgacggctatcgcatccagatcgccgtc
ggcggcgggcaggcgcgcctctacacccgtcgaggccatgactggaccgaccgctttccc
gaactggcggccgatgcggcccagtggcccgacggggtggtggacggcgaactgtgcgcc
ctgaccgaggaccacacgccggacttttccgcccttcaggccgccatcgccgacggaaag
acccaggacctggtctatttcgccttcgacctgctgaaggaaggacgggacgatctgacg
gccctgcctctgtcgcaccgcaaggcgcggctccaggccctgatcgaccggatcccggcc
aaggcgcgggggagggtgcgctatgtcgatcacttcgcctccaccggccaggcggtgctg
gacagcgcctgccggatggatctggaaggggtgatctccaagacgctgaacgccccctat
cagccgggccggtcctcgacctgggtcaagtccaaatgccgcggcagggacgaggtcgtc
atcggcggctggtcgtcggagggcgggacgcgctttcgctccctcctggtcggcgtggcg
gaggaggaggggctgcgttacctcggccgggtcgggaccggctattccgccccgctgctg
aagaccctgctgcccgcgctgaaggcggcggcggccgagacctcgcccttcgtcggaaag
ggggcgccgcgcggcggcaaggacatccactggctgcggccggtcctggtggccgagctg
gaacacggcggtctgaccgaaggcggctccctgcgccatgcggccttcaaggggctgcgc
gaggacaagcgggctcaggaggtggtcgatgatccgcaaccgccgtcgccgaaacaggcg
gagaaggccgcgccgacgccgcgccgaacgggcaaggacaaggtggtcgtcgccggcgtc
accctgtccagcccggacaaggtgctgtggcccgccgccggggggcggccggccatcacc
aagacgggcctggcccgctactatgaacaggcggccgaacggatcctggcccatgtcgcc
gaccggccggtgtcgatcatccgcgcgcccgacgggatcgagggcgagaccttcttccag
cgccacgccatgccgggctcgaacccgcggctgaagctgatcgacgtgcatgagcgcaaa
ccctatgtcgccgtggtcgatgtcggggggctggtcgccgtcgcccagtcgggcgggctt
gagctgcacccgtggggctgtcggcccggcgatccggagacgcccgaacaggtcaccttc
gacctggatcccgacgaaggtctggacttcgaagcggtcatcgcggcggccaagacggtg
cgaaaaacgctcgaggccaaggggctgaaccccttcgtcaagacgaccggcggcaagggg
ctgcatgtcgtggttccgatccgctcggacggccgcagccggatcgaatgggaccgatgc
aaggccttcgccaaggccgtggccgaagaggtgcgacgcgccgatcccgaccggttcacc
accaccctggccaagaaggcgcgcggcggaaagatcttcatcgactatctgaggaacggc
cggatggcgacggcggtggcgccctggtctgtgcgggcgcggccgggcgcaggcatcgcc
tttcccctgtcctggggccaggtcaaggcgggcctggatccccgggccttcacccttcac
gacgccccggccctgctgaagaagtccgatccgtggaaggacttcagggccggcgaggtc
agcctgcggcccgtgctgaaggcgatggggctttag

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