Balearica regulorum gibbericeps (East African grey crowned-crane): 104629541
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Entry
104629541 CDS
T09009
Symbol
LIG4
Name
(RefSeq) DNA ligase 4
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
breg
Balearica regulorum gibbericeps (East African grey crowned-crane)
Pathway
breg03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
breg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
104629541 (LIG4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
breg03400
]
104629541 (LIG4)
Enzymes [BR:
breg01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
104629541 (LIG4)
DNA repair and recombination proteins [BR:
breg03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
104629541 (LIG4)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DNA_ligase_IV
BRCT
DNA_ligase_A_C
BRCT_2
RNA_ligase
mRNA_cap_enzyme
ATG17_like
Tox-REase-9
SKA1
Motif
Other DBs
NCBI-GeneID:
104629541
NCBI-ProteinID:
XP_010304497
LinkDB
All DBs
Position
Unknown
AA seq
911 aa
AA seq
DB search
MASAPVLQPSPKKTVASHVPFADLCSTLERIQTCKSRPEKTKYFKDFLDSWRKFHDALHQ
KENNVTDSFYPAMRLILPQLERERMAYGIKETMLAKLYIELLNLPKDGKDAAKLLNYRTP
AGSRGDAGDFAMIAYFVLKPRSPKQGRLTIEQVNEHLDAIANNNAAKNKGLLKKSLLQLI
TQSTALEQKWLIRMIIKDLKLGVSQQTIFSIFHPDAAELHNVTTDLEKVCRQLHDPSISL
SDVSIMLFSAFKPMLAAIADIQQIEKQMNNQIFYIETKLDGERMQMHKDGDVYKYFSRNG
FDYTQQFGASPLDGSLTPFIHNVFKSNIQNCILDGEMMAYNPETQTFMQKGNKFDIKRMV
EDSDLQTCFCVFDVLMVNDRKLGHEVLSKRYEILSSVFTPITGRIHVVHKKNARTRKEVI
DALNEAIDNREEGIMVKDPMSTYKPDKRGEGWLKIKPEYVSGLMDELDLLIVGGYWGKGS
RGGMMSHFLCAIAETPPPNEKPTVFHSICRVGSGYTMKELYDLGLKLAKHWKPYHRKEPP
CNILCGTEKPEMYIEPCNSVIVQIKAAEIVDSDMYKTDCTLRFPRIEKIREDKEWYECMT
LDMLEDLRSKAEGKLASKHLHIDEYDEPQEKKRKTVPKVKKIIGIAEQFKAPDLSNVNKV
SNVFEDVEFCVMTGTSKYSKSELESRIAECGGSVVQNPGPETYCVIVGAENVRVKNIIAS
NKYDVVRAEWLLQCFQTKMLVPWQPAFMIHMSPDTREHFAREYDCYGDSYTVDTDVAQLK
EVFSRMKDNKAMPLDMIAELEDRYSWNSCQFSIFRGNTIYVDCYAAVNEPRTKIHGTLSI
RALELRFYGAKVVSHLEEGISHVVIGEDHSRVKEMKTLRRTFGKKFKIVSELWVTESVEE
GVLKNENQYLI
NT seq
2736 nt
NT seq
+upstream
nt +downstream
nt
atggcttccgcacctgttttgcagccttctcctaaaaaaacggtggcctctcacgtgcct
tttgcagatctgtgttctactctggagcgaatacagacgtgtaaatctcgtccagagaaa
accaagtatttcaaggattttctggattcctggagaaaattccatgatgctcttcatcaa
aaagagaacaacgtcacagattctttttatccagctatgcgacttattcttccacagttg
gaaagagaaaggatggcatatggaattaaagaaactatgcttgcaaagctgtatattgaa
ctgcttaatttaccaaaagatggaaaagatgctgcaaagcttttaaattacagaacacct
gctggctcacgtggagatgctggagattttgcaatgattgcgtactttgtgttaaaacct
aggagcccaaaacaaggcagactgacaatagaacaagtcaatgaacacttagatgcaata
gctaataataatgctgctaaaaacaagggtctgttaaagaaaagtcttcttcagttaatt
acccagagcacagcactggaacaaaaatggctcatccggatgattataaaggatctaaag
cttggtgttagtcaacaaactatattttccatttttcatcctgatgctgctgaattacac
aatgtcacaactgatttggaaaaagtttgcaggcaactgcatgatccctctatctcgctt
agtgatgtttctattatgttgttttctgcctttaaaccaatgcttgctgctatcgctgat
atccagcaaattgagaaacaaatgaataaccagatattctacatagaaactaagctggat
ggtgaacgcatgcagatgcacaaagatggagatgtatataaatatttttcccgaaatggg
tttgactatactcagcagtttggtgcttccccccttgatggttccttaacgccatttatt
cataatgtatttaaaagcaatatacaaaattgcattcttgatggtgaaatgatggcttac
aatcctgagacacaaacctttatgcaaaaaggaaacaagtttgacataaaaagaatggtg
gaggactctgatctgcagacctgcttctgtgtgtttgatgtattgatggttaacgatcgg
aagctgggtcacgaggtgctaagcaaaagatacgaaatcttaagtagcgtatttaccccg
ataacgggcaggatacatgttgtacataaaaaaaatgctagaacgagaaaagaagtaatt
gatgctttaaatgaagcaatagataacagagaagaagggattatggtgaaagatcccatg
tccacctataagcctgacaaacgtggggaaggctggttaaaaatcaagccagaatacgtc
agtgggctgatggatgaactggaccttttaattgttggtggttactggggaaagggctca
cgtggtggaatgatgtctcattttctgtgtgctattgcggagacgccccctccaaatgaa
aaacctaccgtttttcactccatttgtcgtgttggctctggctatactatgaaggaattg
tacgatttaggtttgaaactggctaaacactggaagccctaccataggaaggagcctccc
tgtaacattttgtgtggaactgagaaacctgaaatgtacattgaaccttgcaactctgtc
atcgttcagatcaaggcagccgagattgttgacagtgacatgtacaaaactgactgtact
ttgagattcccccgaattgagaagataagagaggacaaagaatggtacgagtgcatgact
ttggacatgttagaagatctcagaagcaaagcagaagggaagctggcatctaagcacctt
catatagatgagtatgatgagccacaagagaaaaaaaggaaaactgtaccaaaggtgaag
aagataattggaatagctgagcaatttaaagctcctgatctttctaatgtaaacaaggtt
tcaaatgtatttgaagatgttgagttttgtgttatgacaggaaccagcaaatactcaaag
tcagaactggaaagcagaatagccgaatgtggtggcagcgtggtacagaacccagggcct
gagacttactgtgtcattgtaggagctgagaacgtcagagtaaaaaacatcattgcttcc
aacaaatatgatgtggtgagggcagagtggctccttcagtgttttcaaaccaaaatgctg
gtgccttggcagccagcctttatgattcacatgtcccctgacacaagggaacattttgct
cgtgagtatgattgttatggagacagctacacagtagacacggatgttgcacaactcaag
gaagtgttctcaagaatgaaagacaataaggcgatgcccttggacatgattgcagagtta
gaagatcgttactcatggaacagttgtcagttcagtattttcagaggaaacactatttat
gtagactgttatgctgctgttaatgagcccagaaccaaaatccatggaacactatccatt
agagctttggagctccgtttttatggtgcaaaagtagtctctcatcttgaagagggcatc
tcccatgttgttataggagaagatcattcccgagtaaaagagatgaaaaccctcaggaga
acatttgggaaaaaatttaaaattgtatctgagctgtgggtaacggagtcagtggaggaa
ggagtcctaaagaatgaaaatcagtacttaatttaa
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