Balearica regulorum gibbericeps (East African grey crowned-crane): 104642793
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Entry
104642793 CDS
T09009
Symbol
UPF1
Name
(RefSeq) regulator of nonsense transcripts 1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
breg
Balearica regulorum gibbericeps (East African grey crowned-crane)
Pathway
breg03013
Nucleocytoplasmic transport
breg03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
breg00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
104642793 (UPF1)
03015 mRNA surveillance pathway
104642793 (UPF1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
breg03019
]
104642793 (UPF1)
Enzymes [BR:
breg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
104642793 (UPF1)
5.6.2.5 RNA 5'-3' helicase
104642793 (UPF1)
Messenger RNA biogenesis [BR:
breg03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
104642793 (UPF1)
mRNA cycle factors
Common to processing body (P body) and stress granule
104642793 (UPF1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
ATPase
nSTAND3
DEAD
Helicase_RecD
AAA_16
UvrD-helicase
SRP54
UvrD_C_2
AAA_22
Motif
Other DBs
NCBI-GeneID:
104642793
NCBI-ProteinID:
XP_010310196
LinkDB
All DBs
Position
Unknown
AA seq
1063 aa
AA seq
DB search
FESDLAEQVKESSDGVDKVLEVNGPDGILQNGAVDDNVAKTSQLLAELNFEEDEEDTYYT
KDLPVHACSYCGIHDPACVVYCNTSKKWFCNGRGNTSGSHIVNHLVRAKCKEVTLHKDGP
LGETVLECYNCGCRNVFLLGFIPAKADSVVVLLCRQPCASQSSLKDINWDSSQWQPLIQD
RCFLSWLVKIPSEQEQLRARQITAQQINKLEELWKENPSATLEDLEKPGVDEEPQHVLLR
YEDAYQYQNIFGPLVKLEADYDKKLKESQTQDNITVRWDLGLNKKRIAYFTLPKTDSDMR
LMQGDEICLRYKGDLAPLWKGIGHVIKVPDNYGDEIAIELRSSVGAPVEVTHNFQVDFVW
KSTSFDRMQSALKTFAVDETSVSGYIYHKLLGHEVEDVIIKCQLPKRFTAQGLPDLNHSQ
VYAVKTVLQRPLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIH
QTGLKVVRLCAKSREAIDSPVSFLALHNQIRNMDSMPELQKLQQLKDETGELSSADEKRY
RALKRTAERELLMNADVICCTCVGAGDPRLAKMQFRSILIDESTQATEPECMVPVVLGAK
QLILVGDHCQLGPVVMCKKAAKAGLSQSLFERLVVLGIRPIRLQVQYRMHPALSAFPSNI
FYEGSLQNGVTAADRVKKGFDFQWPQPDKPMFFYVTQGQEEIASSGTSYLNRTEAANVEK
ITTKLLKAGAKPDQIGIITPYEGQRSYLVQYMQFSGSLHTKLYQEVEIASVDAFQGREKD
FIILSCVRANEHQGIGFLNDPRRLNVALTRARYGVIIVGNPKALSKQPLWNHLLNYYKEQ
KVLVEGPLNNLRESLMQFSKPRKLVNTINPGARFMTTAMYDAREAIIPGSVYDRSSQGRP
SNMYFQTHDQIGMISAGPSHVTAMNIPIPFNLVMPPMPPPGYFGQANGPAAGRGAPKGKT
GRGGRQKNRFGIPGTSQSNLPNSQASQDVVSQPFSQGPLTQGYISMSQPSQMSQPGLSQP
ELSQDSYLGDEFKSQIDVALSQDSTYQGERAYQHGGVTGLSQY
NT seq
3193 nt
NT seq
+upstream
nt +downstream
nt
atttgagagcgatcttgctgaacaggtcaaagaatccagtgatggagtggacaaagtttt
ggaggttaatggacctgatggcattctccagaatggagctgtggatgataatgtggctaa
aaccagccagcttctggcagagttgaattttgaagaagatgaagaagatacctattacac
aaaggatcttcctgtgcatgcttgcagttactgtggtatccatgaccctgcttgtgtggt
ttactgtaacaccagcaaaaagtggttctgtaatgggcgtggaaatacatctggcagcca
cattgttaatcatcttgtgagagcaaagtgcaaagaggtgactctccataaagatggacc
tcttggagagactgtcttggaatgttataactgtggatgtcgtaatgtgtttctccttgg
ctttattccagctaaggcagactctgtggtggttttgctgtgcaggcagccatgtgccag
tcagagcagtttaaaggatataaattgggacagttcacagtggcagcctcttatccaaga
tcgctgtttcctttcgtggctggtaaagattccatctgaacaggaacagttgagagcacg
tcagattacagctcaacagattaacaaactggaagaactttggaaggaaaatccatctgc
aacccttgaggacttagaaaagcctggtgttgatgaagaaccacagcatgtcctgcttag
atatgaagatgcttatcaataccaaaatatatttggtcctctagtcaagcttgaggcaga
ctatgacaagaaactcaaggagtctcagacccaagataacatcacagtcagatgggacct
gggcttgaacaagaaaagaattgcttatttcactctgccaaagactgattcagatatgcg
tcttatgcaaggagatgagatctgcttgaggtataaaggagacctggcccctttatggaa
aggaattggtcatgttatcaaagttcctgataattatggtgatgagatagccattgagct
gaggagcagcgttggagcacctgtggaagttactcataacttccaagtggattttgtatg
gaagtctacttcatttgacagaatgcagagtgctttaaaaacatttgctgtcgatgagac
ttcagtgtctgggtacatctatcacaaactgttaggtcacgaggtagaagatgtaattat
taaatgccagttgccaaaacgctttacagcacaaggacttcctgatctcaaccactctca
ggtttatgctgtgaagactgtcctgcagcgtcctctgagccttattcagggtccccctgg
taccggaaaaacagtgacatcagccacaatcgtctatcatctggctagacagggcaatgg
gcctgtgttagtctgtgctccaagtaatatagctgtagatcagttgactgagaagatcca
tcaaactggactgaaagtggttcgtctgtgtgctaaaagtcgtgaggcaattgactctcc
tgtatccttcttggcattgcacaaccagatcagaaacatggatagcatgccagagcttca
gaaactgcagcagcttaaagatgaaactggagaactctcatctgctgatgagaaacgcta
ccgtgcactgaaacgaacagcagagcgtgaattacttatgaatgcagatgtgatctgttg
cacatgtgtgggcgctggtgatccaagacttgcaaaaatgcagttccgctccattctgat
tgatgaaagcacccaggctactgagccagagtgcatggtgccagttgtcctgggagcaaa
acagcttattcttgtaggtgaccactgccagcttggtcctgttgtgatgtgtaaaaaagc
tgcaaaggctggtctatctcagtctctcttcgagaggcttgtggtgctggggattcgtcc
aattcgcctgcaagtacagtatcgcatgcatcctgcgctcagtgcttttccatccaacat
cttctatgagggttcactccagaatggcgttactgcagcggaccgtgtgaaaaaaggttt
tgatttccagtggccacagccagataagcccatgtttttctatgttacacaaggacagga
agaaattgccagctcaggcacctcttacttgaacaggacggaagctgccaatgtggagaa
gataaccacaaagctactgaaagctggtgccaaaccagaccagattggcattattactcc
ttatgaaggtcaacgatcctatctggtgcagtacatgcaattcagtggttccttgcatac
aaagctctaccaggaagtggaaattgcaagtgtggatgccttccagggacgagagaagga
ctttattatcctttcttgtgtgagggccaatgaacaccaaggaatagggtttctgaatga
ccccaggcgtcttaatgtagctcttacaagggcaaggtatggagtaattattgttgggaa
cccaaaagcgctgtctaaacaaccactttggaatcacctgttgaattactacaaggagca
gaaggttctggtggagggaccactgaataacctccgggaaagccttatgcagttcagcaa
gccccggaaacttgtcaataccatcaacccgggtgcccgtttcatgaccactgccatgta
tgatgcacgtgaagctattattccaggatctgtctatgaccggagcagccaagggcgccc
atccaacatgtacttccaaacccatgaccagatcgggatgattagtgctggccccagcca
cgtcactgcgatgaacattcccatccctttcaaccttgtgatgccaccgatgccgccacc
aggatactttggccaggctaacggaccagccgcaggacgtggggcgccaaaaggaaagac
tggtcgtggtgggcgccagaaaaatcgttttgggattcctggaactagtcagtcaaacct
tccaaatagtcaagcaagccaagatgtggtgtcccagcctttctcccagggtccactgac
tcaggggtatatctccatgagtcagccatcgcagatgagtcagcctgggctctcccagcc
agaattatcacaggacagttaccttggtgatgagtttaaatctcagattgatgtggcgct
gtcacaggactctacttaccagggtgaacgtgcatatcaacatggcggagtgacgggact
gtcacagtattag
DBGET
integrated database retrieval system
